Evidence map›Paper›PMID 22653727›Full record

ArticleScience (New York, N.Y.)2012

Crystal structure of the heterodimeric CLOCK:BMAL1 transcriptional activator complex.

Nian Huang, Yogarany Chelliah, Yongli Shan, Clinton A Taylor, Seung-Hee Yoo, Carrie Partch, Carla B Green, Hong Zhang, Joseph S Takahashi

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 187 papers.

0numbers the graph read from it
0cells of the map it votes in
187citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

187 citing papers in PubMed, 350 citations in OpenAlex.

  1. Review
  2. Review
  3. Juvenile hormone receptor relies on conserved domain interfaces for dimerization-dependent activity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. The CLOCK-BMAL1 complex in circadian regulation: structure, mechanisms, and therapeutic targeting.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  5. Review
  6. Review
  7. Context-dependent variability of HIF heterodimers influences interactions with macromolecular and small molecule partners.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Small Molecule Regulation of CLOCK:BMAL1 DNA Binding Activity.bioRxiv : the preprint server for biology · 2026
    Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Review
  20. Circadian genesJournal of Zhejiang University. Science. B · 2025
    Review

127 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nian HuangDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yogarany Chelliah
Yongli Shan
Clinton A Taylor
Seung-Hee Yoo
Carrie Partch
Carla B Green
Hong Zhang
Joseph S Takahashi
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

Structure/Function Studies of Mammalian Circadian Clock ProteinsR01GM090247 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GREEN, CARLA B. · 2011 to 2014
$1.3M
Structural studies of PAS domain signaling mechanismsR01GM081875 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARDNER, KEVIN H · 2007 to 2010
$1.2M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM081875NIGMS NIH HHS R01 GM090247
6 · The paper itself

Abstract

The circadian clock in mammals is driven by an autoregulatory transcriptional feedback mechanism that takes approximately 24 hours to complete. A key component of this mechanism is a heterodimeric transcriptional activator consisting of two basic helix-loop-helix PER-ARNT-SIM (bHLH-PAS) domain protein subunits, CLOCK and BMAL1. Here, we report the crystal structure of a complex containing the mouse CLOCK:BMAL1 bHLH-PAS domains at 2.3 Å resolution. The structure reveals an unusual asymmetric heterodimer with the three domains in each of the two subunits--bHLH, PAS-A, and PAS-B--tightly intertwined and involved in dimerization interactions, resulting in three distinct protein interfaces. Mutations that perturb the observed heterodimer interfaces affect the stability and activity of the CLOCK:BMAL1 complex as well as the periodicity of the circadian oscillator. The structure of the CLOCK:BMAL1 complex is a starting point for understanding at an atomic level the mechanism driving the mammalian circadian clock.

Indexed as

Circadian RhythmTranscriptional ActivationAmino Acid SequenceAnimalsARNTL Transcription FactorsCells, CulturedCLOCK ProteinsCrystallography, X-RayDNAHEK293 CellsHelix-Loop-Helix MotifsHumansMiceModels, MolecularMolecular Sequence DataMutant ProteinsARNTL Transcription FactorsBmal1 protein, mouseClock protein, mouseCLOCK ProteinsDNAMutant ProteinsProtein Subunits

Identifiers

PMID22653727
PMCPMC3694778
OpenAlexW2088724035

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.