Evidence map›Paper›PMID 22652769›Full record

ReviewFrontiers in bioscience (Landmark edition)2012

Ubiquitin and its binding domains.

Leah Randles, Kylie J Walters

Open access · bronzeAbstract readReview
In one paragraph

Review in Frontiers in bioscience (Landmark edition), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. A ubiquitin language communicates ribosomal distress.Seminars in cell & developmental biology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. UBE2G1 Is a Critical Component of Immune Response to the Infection ofInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Ubiquitin-related processes and innate immunity in C. elegans.Cellular and molecular life sciences : CMLS · 2021
    Review
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Leah RandlesDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, USA.
Kylie J Walters
University of Minnesota · US

Funding

Ubiquitin signaling for protein degradationZIABC011490 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WALTERS, KYLIE · 2013 to 2025
$21.1M
Linking proteasome activity to DNA repair through hHR23R01CA097004 · NCI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI WALTERS, KYLIE J. · 2003 to 2012
$2.4M
NMR Structural Studies of Ubiquitin Receptor Protein ComplexesR01CA136472 · NCI · UNIVERSITY OF MINNESOTA · PI WALTERS, KYLIE J. · 2010 to 2013
$1.1M
Structural Analysis of NAT Acetylation, Substrate Specificity and PolymorphismsR01CA117888 · NCI · UNIVERSITY OF MINNESOTA · PI WALTERS, KYLIE J. · 2007 to 2010
$900k
NCI NIH HHS CA097004NCI NIH HHS CA117888NCI NIH HHS CA136472NCI NIH HHS R01 CA097004NCI NIH HHS R01 CA117888NCI NIH HHS R01 CA136472
6 · The paper itself

Abstract

Post-translational modification by ubiquitin (ubiquitination, ubiquitylation, ubiquitinylation) is used as a robust signaling mechanism in a variety of processes that are essential for cell homeostasis. Its signaling specificity is conferred by the inherent dynamics of ubiquitin, the multivalency of ubiquitin chains, and its subcellular context, often defined by ubiquitin receptors and the substrate. Greater than 150 ubiquitin receptors have been found and their ubiquitin-binding domains (UBDs) are structurally diverse and include alpha-helical motifs, zinc fingers (ZnF), pleckstrin-homology (PH) domains, ubiquitin conjugating (Ubc)-related structures and src homology 3 (SH3) domains. New UBD structural motifs continue to be identified expanding the ubiquitin-signaling map to proteins and structural families not previously associated with ubiquitin trafficking. In this manuscript, we highlight several ubiquitin receptors from the multiple UBD folds with a focus on the structural characteristics of their interaction with ubiquitin.

Indexed as

Amino Acid MotifsAnimalsBinding SitesHumansModels, MolecularProtein Structure, TertiarySignal TransductionStatic ElectricityUbiquitinUbiquitinationZinc FingersUbiquitin

Identifiers

PMID22652769
PMCPMC6295927
OpenAlexW2012448461

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.