Evidence map›Paper›PMID 22650963›Full record

ArticleBiochemistry2012

The Skp chaperone helps fold soluble proteins in vitro by inhibiting aggregation.

Kevin C Entzminger, Christine Chang, Ryan O Myhre, Katie C McCallum, Jennifer A Maynard

Abstract read
In one paragraph

Article in Biochemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. International journal of molecular sciences · 2020
    Review
  6. Proteomic profiling ofBioImpacts : BI · 2020
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Increased Fab thermoresistance via VH-targeted directed evolution.Protein engineering, design & selection : PEDS · 2015
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kevin C EntzmingerDepartment of Chemistry, University of Texas at Austin, Austin, Texas 78712, USA.
Christine Chang
Ryan O Myhre
Katie C McCallum
Jennifer A Maynard
The University of Texas at Austin · US

Funding

Returning to the workforce supplement request for R01 GM095638R01GM095638 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI MAYNARD, JENNIFER A · 2010 to 2014
$1.3M
Antibody-mediated protection against whooping coughR21AI066239 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI MAYNARD, JENNIFER A · 2005 to 2006
$402k
NIAID NIH HHS AI066239NIAID NIH HHS R21 AI066239NIGMS NIH HHS GM095638NIGMS NIH HHS R01 GM095638
6 · The paper itself

Abstract

The periplasmic seventeen kilodalton protein (Skp) chaperone has been characterized primarily for its role in outer membrane protein (OMP) biogenesis, during which the jellyfish-like trimeric protein encapsulates partially folded OMPs, protecting them from the aqueous environment until delivery to the BAM outer membrane protein insertion complex. However, Skp is increasingly recognized as a chaperone that also assists in folding soluble proteins in the bacterial periplasm. In this capacity, Skp coexpression increases the active yields of many recombinant proteins and bacterial virulence factors. Using a panel of single-chain antibodies and a single-chain T-cell receptor (collectively termed scFvs) possessing varying stabilities and biophysical characteristics, we performed in vivo expression and in vitro folding and aggregation assays in the presence or absence of Skp. For Skp-sensitive scFvs, the presence of Skp during in vitro refolding assays reduced aggregation but did not alter the observed folding rates, resulting in a higher overall yield of active protein. Of the proteins analyzed, Skp sensitivity in all assays correlated with the presence of folding intermediates, as observed with urea denaturation studies. These results are consistent with Skp acting as a holdase, sequestering partially folded intermediates and thereby preventing aggregation. Because not all soluble proteins are sensitive to Skp coexpression, we hypothesize that the presence of a long-lived protein folding intermediate renders a protein sensitive to Skp. Improved understanding of the bacterial periplasmic protein folding machinery may assist in high-level recombinant protein expression and may help identify novel approaches to block bacterial virulence.

Indexed as

Protein FoldingProtein MultimerizationAnimalsDNA-Binding ProteinsEscherichia coli ProteinsModels, MolecularMolecular ChaperonesMuramidaseProtein DenaturationProtein RefoldingProtein Structure, QuaternarySingle-Chain AntibodiesSolubilityUreaDNA-Binding ProteinsEscherichia coli ProteinsMolecular ChaperonesMuramidaseSingle-Chain AntibodiesSkp protein, E coliUrea

Identifiers

PMID22650963
PMCPMC3794430
OpenAlexW2057475586

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.