Evidence map›Paper›PMID 22649506›Full record

ArticlePloS one2012

Paired tumor and normal whole genome sequencing of metastatic olfactory neuroblastoma.

Glen J Weiss, Winnie S Liang, Tyler Izatt, Shilpi Arora, Irene Cherni, Robert N Raju, Galen Hostetter, Ahmet Kurdoglu, Alexis Christoforides, Shripad Sinari and 7 more

Open access · goldAbstract readCase Reports
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Article
  6. Update on olfactory neuroblastoma.Virchows Archiv : an international journal of pathology · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Clinical tumor sequencing: opportunities and challenges for precision cancer medicine.American Society of Clinical Oncology educational book. American Society of Clinical Oncology. Annual Meeting · 2015
    Review
  17. Article
  18. Article
  19. Genomic sequencing in cancer.Cancer letters · 2013
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 1 country.

Glen J WeissVirginia G. Piper Cancer Center Clinical Trials at Scottsdale Healthcare (VGPCC), Scottsdale, Arizona, United States of America. gweiss@tgen.org
Winnie S Liang
Tyler Izatt
Shilpi Arora
Irene Cherni
Robert N Raju
Galen Hostetter
Ahmet Kurdoglu
Alexis Christoforides
Shripad Sinari
Angela S Baker
Raghu Metpally
Waibhav D Tembe
Lori Phillips
Daniel D Von Hoff
David W Craig
John D Carpten
Translational Genomics Research Institute · US

Funding

Highly Parallel Supercomputing for Translational ResearchS10RR025056 · NCRR · TRANSLATIONAL GENOMICS RESEARCH INST · PI SUH, EDWARD B · 2008 to 2008
$2.0M
64-Bit High Performance ComputingS10RR023390 · NCRR · TRANSLATIONAL GENOMICS RESEARCH INST · PI SUH, EDWARD B · 2007 to 2007
$403k
NCRR NIH HHS 1S10RR023390-01NCRR NIH HHS 1S10RR25056-01NCRR NIH HHS S10 RR023390NCRR NIH HHS S10 RR025056
6 · The paper itself

Abstract

backgroundOlfactory neuroblastoma (ONB) is a rare cancer of the sinonasal tract with little molecular characterization. We performed whole genome sequencing (WGS) on paired normal and tumor DNA from a patient with metastatic-ONB to identify the somatic alterations that might be drivers of tumorigenesis and/or metastatic progression. METHODOLOGY/PRINCIPAL

findingsGenomic DNA was isolated from fresh frozen tissue from a metastatic lesion and whole blood, followed by WGS at >30X depth, alignment and mapping, and mutation analyses. Sanger sequencing was used to confirm selected mutations. Sixty-two somatic short nucleotide variants (SNVs) and five deletions were identified inside coding regions, each causing a non-synonymous DNA sequence change. We selected seven SNVs and validated them by Sanger sequencing. In the metastatic ONB samples collected several months prior to WGS, all seven mutations were present. However, in the original surgical resection specimen (prior to evidence of metastatic disease), mutations in KDR, MYC, SIN3B, and NLRC4 genes were not present, suggesting that these were acquired with disease progression and/or as a result of post-treatment effects. CONCLUSIONS/SIGNIFICANCE: This work provides insight into the evolution of ONB cancer cells and provides a window into the more complex factors, including tumor clonality and multiple driver mutations.

Indexed as

Genetic VariationNasal CavityAdultBase SequenceDNA Copy Number VariationsEsthesioneuroblastoma, OlfactoryGene LibraryGenes, NeoplasmGenomeHumansMaleMolecular Sequence DataMutationNeoplasm MetastasisNose NeoplasmsPolymorphism, Single Nucleotide

Identifiers

PMID22649506
PMCPMC3359355
OpenAlexW2142205677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.