Evidence map›Paper›PMID 22649465›Full record

ArticleClinical & developmental immunology2012

Prediction and identification of potential immunodominant epitopes in glycoproteins B, C, E, G, and I of herpes simplex virus type 2.

Mingjie Pan, Xingsheng Wang, Jianmin Liao, Dengke Yin, Suqin Li, Ying Pan, Yao Wang, Guangyan Xie, Shumin Zhang, Yuexi Li

Open access · goldAbstract read
In one paragraph

Article in Clinical & developmental immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Mingjie PanDepartment of Biochemistry and Molecular Biology, School of Preclinical Medicine, Nanjing Medical University, Nanjing 210029, China.
Xingsheng Wang
Jianmin Liao
Dengke Yin
Suqin Li
Ying Pan
Yao Wang
Guangyan Xie
Shumin Zhang
Yuexi Li
Anhui University of Traditional Chinese Medicine · CNNanjing Medical University · CNChina Pharmaceutical University · CNNational Institutes for Food and Drug Control · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Twenty B candidate epitopes of glycoproteins B (gB2), C (gC2), E (gE2), G (gG2), and I (gI2) of herpes simplex virus type 2 (HSV-2) were predicted using DNAstar, Biosun, and Antheprot methods combined with the polynomial method. Subsequently, the biological functions of the peptides were tested via experiments in vitro. Among the 20 epitope peptides, 17 could react with the antisera to the corresponding parent proteins in the EIA tests. In particular, five peptides, namely, gB2(466-473) (EQDRKPRN), gC2(216-223) (GRTDRPSA), gE2(483-491) (DPPERPDSP), gG2(572-579) (EPPDDDDS), and gI2(286-295) (CRRRYRRPRG) had strong reaction with the antisera. All conjugates of the five peptides with the carrier protein BSA could stimulate mice into producing antibodies. The antisera to these peptides reacted strongly with the corresponding parent glycoproteins during the Western Blot tests, and the peptides reacted strongly with the antibodies against the parent glycoproteins during the EIA tests. The antisera against the five peptides could neutralize HSV-2 infection in vitro, which has not been reported until now. These results suggest that the immunodominant epitopes screened using software algorithms may be used for virus diagnosis and vaccine design against HSV-2.

Indexed as

Viral VaccinesAlgorithmsAnimalsAntibodies, NeutralizingAntibodies, ViralComputational BiologyEpitope MappingHerpes GenitalisHerpesvirus 2, HumanHumansImmunodominant EpitopesMiceViral Envelope ProteinsAntibodies, NeutralizingAntibodies, Viralglycoprotein B, herpes simplex virus type 2glycoprotein C, herpes simplex virus type 2glycoprotein E, herpes simplex-virus type 2glycoprotein G, herpes simplex virus type 2Immunodominant EpitopesViral Envelope ProteinsViral Vaccines

Identifiers

PMID22649465
PMCPMC3357521
OpenAlexW1977034083

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.