Evidence map›Paper›PMID 22649022›Full record

ArticleJournal of clinical microbiology2012

Molecular epidemiology of HIV-associated tuberculosis in Dar es Salaam, Tanzania: strain predominance, clustering, and polyclonal disease.

Lisa V Adams, Barry N Kreiswirth, Robert D Arbeit, Hanna Soini, Lillian Mtei, Mecky Matee, Muhammad Bakari, Timothy Lahey, Wendy Wieland-Alter, Elena Shashkina and 5 more

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Recurrent tuberculosis risk among HIV-infected adults in Tanzania with prior active tuberculosis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Lisa V AdamsGeisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA. lisa.v.adams@Dartmouth.edu
Barry N Kreiswirth
Robert D Arbeit
Hanna Soini
Lillian Mtei
Mecky Matee
Muhammad Bakari
Timothy Lahey
Wendy Wieland-Alter
Elena Shashkina
Natalia Kurepina
Jeffrey R Driscoll
Kisali Pallangyo
C Robert Horsburgh
C Fordham von Reyn

Funding

VASCULAR LEUKOCYTES: BASIC IMMUNOBIOLOGY AND FUNCTIONAL PLASTICITYP20RR016437 · NCRR · DARTMOUTH COLLEGE · PI GREEN, WILLIAM R · 2001 to 2010
$24.3M
Dartmouth/Boston University AITRPD43TW006807 · FIC · DARTMOUTH COLLEGE · PI VON REYN, CHARLES FORDHAM · 2003 to 2013
$4.6M
DISSEMINATED TUBERCULOSIS IN HIV INFECTIONR01AI045407 · NIAID · DARTMOUTH COLLEGE · PI VON REYN, C. FORDHAM · 2000 to 2004
$4.6M
Disseminated Tuberculosis in HIV InfectionU01AI045407 · NIAID · DARTMOUTH COLLEGE · PI VON REYN, CHARLES FORDHAM · 2005 to 2008
$4.3M
FIC NIH HHS D43 TW006807FIC NIH HHS D43-TW006807NCRR NIH HHS 5P20RR016437-08NCRR NIH HHS P20 RR016437NIAID NIH HHS AI 45407NIAID NIH HHS R01 AI045407NIAID NIH HHS U01 AI045407
6 · The paper itself

Abstract

Molecular typing of Mycobacterium tuberculosis can be used to elucidate the epidemiology of tuberculosis, including the rates of clustering, the frequency of polyclonal disease, and the distribution of genotypic families. We performed IS6110 typing and spoligotyping on M. tuberculosis strains isolated from HIV-infected subjects at baseline or during follow-up in the DarDar Trial in Tanzania and on selected community isolates. Clustering occurred in 203 (74%) of 275 subjects: 124 (80%) of 155 HIV-infected subjects with baseline isolates, 56 (69%) of 81 HIV-infected subjects with endpoint isolates, and 23 (59%) of 39 community controls. Overall, 113 (41%) subjects had an isolate representing the East Indian "GD" family. The rate of clustering was similar among vaccine and placebo recipients and among subjects with or without cellular immune responses to mycobacterial antigens. Polyclonal disease was detected in 6 (43%) of 14 patients with multiple specimens typed. Most cases of HIV-associated tuberculosis among subjects from this study in Dar es Salaam resulted from recently acquired infection. Polyclonal infection was detected and isolates representing the East Indian GD strain family were the most common.

Indexed as

Molecular TypingAdultAIDS-Related Opportunistic InfectionsCluster AnalysisCoinfectionDNA, BacterialDNA Transposable ElementsFemaleGenotypeHIV InfectionsHumansMaleMolecular EpidemiologyMycobacterium tuberculosisPrevalenceTanzaniaDNA, BacterialDNA Transposable Elements

Identifiers

PMID22649022
PMCPMC3421504

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.