Evidence map›Paper›PMID 22648169›Full record

ArticleMolecular biology of the cell2012

Efficient secretion of small proteins in mammalian cells relies on Sec62-dependent posttranslational translocation.

Asvin K K Lakkaraju, Ratheeshkumar Thankappan, Camille Mary, Jennifer L Garrison, Jack Taunton, Katharina Strub

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 1 pooled it
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 1 synthesis or guideline pooled it, 112 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Engineering small peptide secretion inFrontiers in bioengineering and biotechnology · 2026
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. The 3q OncogeneInternational journal of molecular sciences · 2023
    Article
  18. The Endoplasmic Reticulum and the Fidelity of Nascent Protein Localization.Cold Spring Harbor perspectives in biology · 2023
    Review
  19. Review
  20. Mechanism of Protein Translocation by the Sec61 Translocon Complex.Cold Spring Harbor perspectives in biology · 2023
    Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Asvin K K LakkarajuDepartment of Cell Biology, Sciences III, University of Geneva, Geneva, Switzerland.
Ratheeshkumar Thankappan
Camille Mary
Jennifer L Garrison
Jack Taunton
Katharina Strub
University of Geneva · CHHoward Hughes Medical Institute · US

Funding

Substrate-Selective Inhibitors of Secretory and Membrane Protein BiogenesisR01GM081644 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TAUNTON, JACK · 2007 to 2010
$1.2M
Howard Hughes Medical InstituteNIGMS NIH HHS GM081644NIGMS NIH HHS R01 GM081644
6 · The paper itself

Abstract

Mammalian cells secrete a large number of small proteins, but their mode of translocation into the endoplasmic reticulum is not fully understood. Cotranslational translocation was expected to be inefficient due to the small time window for signal sequence recognition by the signal recognition particle (SRP). Impairing the SRP pathway and reducing cellular levels of the translocon component Sec62 by RNA interference, we found an alternate, Sec62-dependent translocation path in mammalian cells required for the efficient translocation of small proteins with N-terminal signal sequences. The Sec62-dependent translocation occurs posttranslationally via the Sec61 translocon and requires ATP. We classified preproteins into three groups: 1) those that comprise ≤100 amino acids are strongly dependent on Sec62 for efficient translocation; 2) those in the size range of 120-160 amino acids use the SRP pathway, albeit inefficiently, and therefore rely on Sec62 for efficient translocation; and 3) those larger than 160 amino acids depend on the SRP pathway to preserve a transient translocation competence independent of Sec62. Thus, unlike in yeast, the Sec62-dependent translocation pathway in mammalian cells serves mainly as a fail-safe mechanism to ensure efficient secretion of small proteins and provides cells with an opportunity to regulate secretion of small proteins independent of the SRP pathway.

Indexed as

Protein TransportAdenosine TriphosphateEndoplasmic ReticulumHEK293 CellsHeLa CellsHumansMembrane Transport ProteinsProteinsProtein Sorting SignalsRNA InterferenceRNA, Small InterferingSignal Recognition ParticleSignal TransductionAdenosine TriphosphateMembrane Transport ProteinsProteinsProtein Sorting SignalsRNA, Small InterferingSEC62 protein, humanSignal Recognition Particle

Identifiers

PMID22648169
PMCPMC3395660
OpenAlexW1982573893

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.