Evidence map›Paper›PMID 22647870›Full record

ArticleMolecular & cellular proteomics : MCP2012

Identification of new autoantigens for primary biliary cirrhosis using human proteome microarrays.

Chao-Jun Hu, Guang Song, Wei Huang, Guo-Zhen Liu, Chui-Wen Deng, Hai-Pan Zeng, Li Wang, Feng-Chun Zhang, Xuan Zhang, Jun Seop Jeong and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 93 citations in OpenAlex.

  1. Trial
  2. Anti-kelch-like 12 and anti-hexokinase 1: novel autoantibodies in primary biliary cirrhosis.Liver international : official journal of the International Association for the Study of the Liver · 2015
    Trial
  3. Review
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  5. Article
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  9. Review
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  11. PhIP-Seq: methods, applications and challenges.Frontiers in bioinformatics · 2024
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Chao-Jun HuDepartment of Rheumatology and Clinical Immunology, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100032, China.
Guang Song
Wei Huang
Guo-Zhen Liu
Chui-Wen Deng
Hai-Pan Zeng
Li Wang
Feng-Chun Zhang
Xuan Zhang
Jun Seop Jeong
Seth Blackshaw
Li-Zhi Jiang
Heng Zhu
Lin Wu
Yong-Zhe Li
Chinese Academy of Medical Sciences & Peking Union Medical College · CNChinese Academy of Sciences · CNHigh Throughput Biology (United States) · USJohns Hopkins University · USPeking Union Medical College Hospital · CNBeijing Institute of Genomics · CN

Funding

TCP5: ACTIVE SITE LABELING REAGENT FOR ACETYLTRANSFERASESU54RR020839 · NCRR · JOHNS HOPKINS UNIVERSITY · PI BOEKE, JEF D · 2004 to 2011
$27.4M
Networks, Pathways and Dynamics of Lysine ModificationU54GM103520 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI BADER, JOEL S. · 2012 to 2013
$7.0M
Visual Programming Tool for Integrated Gene/Protein Networks in Cancer ResearchR44CA125807 · NCI · INCOGEN, INC. · PI SASINOWSKI, MACIEK · 2008 to 2011
$3.4M
Visual Programming Tool for Integration of Gene and Protein Cancer Profiling DataR43CA125807 · NCI · INCOGEN, INC. · PI SASINOWSKI, MACIEK · 2007 to 2007
$150k
NCI NIH HHS CA125807NCI NIH HHS R43 CA125807NCI NIH HHS R44 CA125807NCRR NIH HHS RR020839NCRR NIH HHS U54 RR020839NIGMS NIH HHS U54 GM103520
6 · The paper itself

Abstract

Primary biliary cirrhosis (PBC) is a chronic cholestatic liver disease of unknown etiology and is considered to be an autoimmune disease. Autoantibodies are important tools for accurate diagnosis of PBC. Here, we employed serum profiling analysis using a human proteome microarray composed of about 17,000 full-length unique proteins and identified 23 proteins that correlated with PBC. To validate these results, we fabricated a PBC-focused microarray with 21 of these newly identified candidates and nine additional known PBC antigens. By screening the PBC microarrays with additional cohorts of 191 PBC patients and 321 controls (43 autoimmune hepatitis, 55 hepatitis B virus, 31 hepatitis C virus, 48 rheumatoid arthritis, 45 systematic lupus erythematosus, 49 systemic sclerosis, and 50 healthy), six proteins were confirmed as novel PBC autoantigens with high sensitivities and specificities, including hexokinase-1 (isoforms I and II), Kelch-like protein 7, Kelch-like protein 12, zinc finger and BTB domain-containing protein 2, and eukaryotic translation initiation factor 2C, subunit 1. To facilitate clinical diagnosis, we developed ELISA for Kelch-like protein 12 and zinc finger and BTB domain-containing protein 2 and tested large cohorts (297 PBC and 637 control sera) to confirm the sensitivities and specificities observed in the microarray-based assays. In conclusion, our research showed that a strategy using high content protein microarray combined with a smaller but more focused protein microarray can effectively identify and validate novel PBC-specific autoantigens and has the capacity to be translated to clinical diagnosis by means of an ELISA-based method.

Indexed as

Liver Cirrhosis, BiliaryProtein Array AnalysisAdultArgonaute ProteinsAutoantibodiesAutoantigensAutoimmune DiseasesCarrier ProteinsEukaryotic Initiation FactorsFemaleHexokinaseHumansMaleMiddle AgedProteomeRepressor ProteinsAGO1 protein, humanArgonaute ProteinsAutoantibodiesAutoantigensCarrier ProteinsEukaryotic Initiation FactorsHexokinaseHK1 protein, humanKLHL6 protein, humanProteomeRepressor Proteins

Identifiers

PMID22647870
PMCPMC3434773
OpenAlexW2057363338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.