Evidence map›Paper›PMID 22647689›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA

Applying knowledge-anchored hypothesis discovery methods to advance clinical and translational research: the OAMiner project.

Philip R O Payne, Rebecca D Jackson, Thomas M Best, Tara B Borlawsky, Albert M Lai, Stephen James, Metin N Gurcan

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Philip R O PayneDepartment of Biomedical Informatics, The Ohio State University, Columbus, Ohio, USA. philip.payne@osumc.edu
Rebecca D Jackson
Thomas M Best
Tara B Borlawsky
Albert M Lai
Stephen James
Metin N Gurcan

Funding

The Ohio State University Center for Clinical and Translational Science (UL1)UL1TR000090 · NCATS · OHIO STATE UNIVERSITY · PI JACKSON, REBECCA D · 2012 to 2013
$7.9M
OAMiner: Integrative Knowledge Anchored Hypothesis DiscoveryR01LM010119 · NLM · OHIO STATE UNIVERSITY · PI GURCAN, METIN NAFI · 2009 to 2010
$1.2M
NCRR NIH HHS U54RR024384NLM NIH HHS R01 LM010119NLM NIH HHS R01LM010119
6 · The paper itself

Abstract

The conduct of clinical and translational research regularly involves the use of a variety of heterogeneous and large-scale data resources. Scalable methods for the integrative analysis of such resources, particularly when attempting to leverage computable domain knowledge in order to generate actionable hypotheses in a high-throughput manner, remain an open area of research. In this report, we describe both a generalizable design pattern for such integrative knowledge-anchored hypothesis discovery operations and our experience in applying that design pattern in the experimental context of a set of driving research questions related to the publicly available Osteoarthritis Initiative data repository. We believe that this 'test bed' project and the lessons learned during its execution are both generalizable and representative of common clinical and translational research paradigms.

Indexed as

Data MiningKnowledge BasesOsteoarthritis, KneeHumansImage Processing, Computer-AssistedNatural Language ProcessingTranslational Research, BiomedicalUser-Computer Interface

Identifiers

PMID22647689
PMCPMC3534452

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.