Evidence map›Paper›PMID 22645416›Full record

ArticleArchaea (Vancouver, B.C.)2012

Archaeal phospholipid biosynthetic pathway reconstructed in Escherichia coli.

Takeru Yokoi, Keisuke Isobe, Tohru Yoshimura, Hisashi Hemmi

Open access · hybridAbstract read
In one paragraph

Article in Archaea (Vancouver, B.C.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Optimizing Archaeal Lipid Biosynthesis inACS synthetic biology · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. ConvertingProceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Biosynthesis of archaeal membrane ether lipids.Frontiers in microbiology · 2014
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Takeru YokoiDepartment of Applied Molecular Bioscience, Graduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Aichi, Japan.
Keisuke Isobe
Tohru Yoshimura
Hisashi Hemmi
Nagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A part of the biosynthetic pathway of archaeal membrane lipids, comprised of 4 archaeal enzymes, was reconstructed in the cells of Escherichia coli. The genes of the enzymes were cloned from a mesophilic methanogen, Methanosarcina acetivorans, and the activity of each enzyme was confirmed using recombinant proteins. In vitro radioassay showed that the 4 enzymes are sufficient to synthesize an intermediate of archaeal membrane lipid biosynthesis, that is, 2,3-di-O-geranylgeranyl-sn-glycerol-1-phosphate, from precursors that can be produced endogenously in E. coli. Introduction of the 4 genes into E. coli resulted in the production of archaeal-type lipids. Detailed liquid chromatography/electron spray ionization-mass spectrometry analyses showed that they are metabolites from the expected intermediate, that is, 2,3-di-O-geranylgeranyl-sn-glycerol and 2,3-di-O-geranylgeranyl-sn-glycerol-1-phosphoglycerol. The metabolic processes, that is, dephosphorylation and glycerol modification, are likely catalyzed by endogenous enzymes of E. coli.

Indexed as

Archaeal ProteinsBiosynthetic PathwaysChromatography, LiquidCloning, MolecularEscherichia coliMembrane LipidsMetabolic EngineeringMethanosarcinaModels, BiologicalPhospholipidsRecombinant ProteinsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationArchaeal ProteinsMembrane LipidsPhospholipidsRecombinant Proteins

Identifiers

PMID22645416
PMCPMC3357500
OpenAlexW2036170725

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.