Evidence map›Paper›PMID 22645359›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire.

David A Ostrov, Barry J Grant, Yuri A Pompeu, John Sidney, Mikkel Harndahl, Scott Southwood, Carla Oseroff, Shun Lu, Jean Jakoncic, Cesar Augusto F de Oliveira and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 193 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
193citing papers in PubMed, 2 pooled it
32.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

193 citing papers in PubMed, 2 syntheses or guidelines pooled it, 416 citations in OpenAlex.

  1. Pooled it
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  4. Review
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  6. Article
  7. Omeprazole activation of CD4+ and CD8+ T-cells through off-target covalent modification of cellular proteins.Toxicological sciences : an official journal of the Society of Toxicology · 2026
    Article
  8. Review
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  12. Article
  13. Article
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  16. Article
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  18. Drug allergy.Allergy, asthma, and clinical immunology : official journal of the Canadian Society of Allergy and Clinical Immunology · 2025
    Review
  19. Article
  20. Review

133 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 3 countries.

David A OstrovDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida College of Medicine, Gainesville, FL 32611, USA.
Barry J Grant
Yuri A Pompeu
John Sidney
Mikkel Harndahl
Scott Southwood
Carla Oseroff
Shun Lu
Jean Jakoncic
Cesar Augusto F de Oliveira
Lun Yang
Hu Mei
Leming Shi
Jeffrey Shabanowitz
A Michelle English
Amanda Wriston
Andrew Lucas
Elizabeth Phillips
Simon Mallal
Howard M Grey
Alessandro Sette
Donald F Hunt
Soren Buus
Bjoern Peters
La Jolla Institute for Immunology · USUniversity of Virginia · USMurdoch University · AUUnited States Food and Drug Administration · USUniversity of Copenhagen · DKUniversity of Florida · USBrookhaven National Laboratory · USFlorida College · USHoward Hughes Medical Institute · USNational Center for Toxicological Research · USUniversity of Michigan–Ann Arbor · US

Funding

UF Clinical and Translational Science AwardUL1TR000064 · NCATS · UNIVERSITY OF FLORIDA · PI NELSON, DAVID R · 2012 to 2014
$12.2M
PROCESSED ANTIGEN CHARACTERIZATION BY MASS SPECTROMETRYR37AI033993 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1999 to 2008
$5.6M
PROCESSED ANTIGEN CHARACTERIZATION BY MASS SPECTROMETRYR01AI033993 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI HUNT, DONALD F · 1994 to 2017
$4.9M
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR000064NIAID NIH HHS AI 33993NIAID NIH HHS R01 AI033993NIAID NIH HHS R37 AI033993PHS HHS HHSN 272 200900045C
6 · The paper itself

Abstract

Idiosyncratic adverse drug reactions are unpredictable, dose-independent and potentially life threatening; this makes them a major factor contributing to the cost and uncertainty of drug development. Clinical data suggest that many such reactions involve immune mechanisms, and genetic association studies have identified strong linkages between drug hypersensitivity reactions to several drugs and specific HLA alleles. One of the strongest such genetic associations found has been for the antiviral drug abacavir, which causes severe adverse reactions exclusively in patients expressing the HLA molecular variant B*57:01. Abacavir adverse reactions were recently shown to be driven by drug-specific activation of cytokine-producing, cytotoxic CD8(+) T cells that required HLA-B*57:01 molecules for their function; however, the mechanism by which abacavir induces this pathologic T-cell response remains unclear. Here we show that abacavir can bind within the F pocket of the peptide-binding groove of HLA-B*57:01, thereby altering its specificity. This provides an explanation for HLA-linked idiosyncratic adverse drug reactions, namely that drugs can alter the repertoire of self-peptides presented to T cells, thus causing the equivalent of an alloreactive T-cell response. Indeed, we identified specific self-peptides that are presented only in the presence of abacavir and that were recognized by T cells of hypersensitive patients. The assays that we have established can be applied to test additional compounds with suspected HLA-linked hypersensitivities in vitro. Where successful, these assays could speed up the discovery and mechanistic understanding of HLA-linked hypersensitivities, and guide the development of safer drugs.

Indexed as

Drug HypersensitivityMajor Histocompatibility ComplexAmino Acid SequenceCrystallography, X-RayEnzyme-Linked Immunosorbent AssayModels, MolecularPeptidesPeptides

Identifiers

PMID22645359
PMCPMC3382472
OpenAlexW2056295780

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.