Evidence map›Paper›PMID 22645259›Full record

ArticleGenome research2012

Genomic characterization of the Bacillus cereus sensu lato species: backdrop to the evolution of Bacillus anthracis.

Michael E Zwick, Sandeep J Joseph, Xavier Didelot, Peter E Chen, Kimberly A Bishop-Lilly, Andrew C Stewart, Kristin Willner, Nichole Nolan, Shannon Lentz, Maureen K Thomason and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 165 citations in OpenAlex.

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  17. Plant PolysaccharideFrontiers in microbiology · 2021
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  18. Phylogenetic Methods for Genome-Wide Association Studies in Bacteria.Methods in molecular biology (Clifton, N.J.) · 2021
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Michael E ZwickDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
Sandeep J Joseph
Xavier Didelot
Peter E Chen
Kimberly A Bishop-Lilly
Andrew C Stewart
Kristin Willner
Nichole Nolan
Shannon Lentz
Maureen K Thomason
Shanmuga Sozhamannan
Alfred J Mateczun
Lei Du
Timothy D Read
Naval Medical Research Command · USEmory University · USEnzo Life Sciences (United States) · USUniversity of Oxford · GB

Funding

Medical Research Council G0600719
6 · The paper itself

Abstract

The key genes required for Bacillus anthracis to cause anthrax have been acquired recently by horizontal gene transfer. To understand the genetic background for the evolution of B. anthracis virulence, we obtained high-redundancy genome sequences of 45 strains of the Bacillus cereus sensu lato (s.l.) species that were chosen for their genetic diversity within the species based on the existing multilocus sequence typing scheme. From the resulting data, we called more than 324,000 new genes representing more than 12,333 new gene families for this group. The core genome size for the B. cereus s.l. group was ∼1750 genes, with another 2150 genes found in almost every genome constituting the extended core. There was a paucity of genes specific and conserved in any clade. We found no evidence of recent large-scale gene loss in B. anthracis or for unusual accumulation of nonsynonymous DNA substitutions in the chromosome; however, several B. cereus genomes isolated from soil and not previously associated with human disease were degraded to various degrees. Although B. anthracis has undergone an ecological shift within the species, its chromosome does not appear to be exceptional on a macroscopic scale compared with close relatives.

Indexed as

Evolution, MolecularGenome, BacterialBacillus anthracisBacillus cereusBase SequenceChromosomes, BacterialDNA, BacterialGenetic VariationGenome SizeHomologous RecombinationMultilocus Sequence TypingPhylogenySelection, GeneticSequence AlignmentSoil MicrobiologyDNA, Bacterial

Identifiers

PMID22645259
PMCPMC3409264
OpenAlexW2105332890

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.