Evidence map›Paper›PMID 22641854›Full record

ArticleNucleic acids research2012

DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks.

Yoan Renaud, Alexandre Baillif, Jean-Baptiste Perez, Marie Agier, Engelbert Mephu Nguifo, Vincent Mirouse

Abstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yoan RenaudGReD Laboratory, Unité Mixte de Recherche Centre National de la Recherche Scientifique 6293, Clermont Université, Institut de la Santé Et de la Recherche Médicale U1103, Faculté de Médecine, Place Henri Dunant, 63000 Clermont-Ferrand, France.
Alexandre Baillif
Jean-Baptiste Perez
Marie Agier
Engelbert Mephu Nguifo
Vincent Mirouse

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DroPNet (Drosophila Protein Network) is a Drosophila-dedicated web portal for generating and analyzing protein-protein interaction (PPI) networks. This platform integrates users' experimental data provided as one or two lists of genes with PPI data from Drosophila and other species. These experimental data can, for example, come from RNAi screens, for which this approach is known to be valuable. DroPNet, therefore, provides an essential basis for further biological analysis by linking functional and physical interactions and reinforcing the relevance of each. DroPNet focuses on the search of PPIs between genes of the entry list, and includes the possibility of searching for intermediate genes for which the corresponding protein indirectly links two entry data. It also offers multiple functions for editing the networks obtained, providing users with interactive possibilities to progressively improve and refine the results. This approach gives a global view of the studied process and makes it possible to highlight specific interactions that have so far been understudied. DroPNet is freely available at http://dropnet.isima.fr.

Indexed as

SoftwareAnimalsDrosophilaDrosophila ProteinsInternetProtein Interaction MappingSystems IntegrationDrosophila Proteins

Identifiers

PMID22641854
PMCPMC3394298

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.