ArticleFrontiers in plant science2012
Functional Annotation of 2D Protein Maps: The GelMap Portal.
Article in Frontiers in plant science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 23 citations in OpenAlex.
- Effect of berry maturity stages on the germination and protein constituents of African nightshade (Solanum scabrum) seeds.Scientific reports · 2024Article
- Ameliorating the effects of multiple stresses on agronomic traits in crops: modern biotechnological and omics approaches.Molecular biology reports · 2023Review
- Omics for the Improvement of Abiotic, Biotic, and Agronomic Traits in Major Cereal Crops: Applications, Challenges, and Prospects.Plants (Basel, Switzerland) · 2021Review
- Legume genomics and transcriptomics: From classic breeding to modern technologies.Saudi journal of biological sciences · 2020Review
- The Arabidopsis EPlant molecular biology · 2019Article
- d-Lactate Dehydrogenase Links Methylglyoxal Degradation and Electron Transport through Cytochrome c.Plant physiology · 2016Article
- Proteomics and Metabolomics: Two Emerging Areas for Legume Improvement.Frontiers in plant science · 2015Review
- The alternative Medicago truncatula defense proteome of ROS-defective transgenic roots during early microbial infection.Frontiers in plant science · 2014Article
- MASCP gator: an overview of the Arabidopsis proteomic aggregation portal.Frontiers in plant science · 2013Review
- The rice mitochondria proteome and its response during development and to the environment.Frontiers in plant science · 2013Article
- 3D Gel Map of Arabidopsis Complex I.Frontiers in plant science · 2013Article
- Managing the green proteomes for the next decade of plant research.Frontiers in plant science · 2013Article
- The Mitochondrial Complexome of Medicago truncatula.Frontiers in plant science · 2013Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In classical proteome analyses, final experimental data are (a) images of 2D protein separations obtained by gel electrophoresis and (b) corresponding lists of proteins which were identified by mass spectrometry (MS). For data annotation, software tools were developed which allow the linking of protein identity data directly to 2D gels ("clickable gels"). GelMap is a new online software tool to annotate 2D protein maps. It allows (i) functional annotation of all identified proteins according to biological categories defined by the user, e.g., subcellular localization, metabolic pathway, or assignment to a protein complex and (ii) annotation of several proteins per analyzed protein "spot" according to MS primary data. Options to differentially display proteins of functional categories offer new opportunities for data evaluation. For instance, if used for the annotation of 2D Blue native/SDS gels, GelMap allows the identification of protein complexes of low abundance. A web portal has been established for presentation and evaluation of protein identity data related to 2D gels and is freely accessible at http://www.gelmap.de/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.