Evidence map›Paper›PMID 22639591›Full record

ArticleFrontiers in plant science2011

Mining disease-resistance genes in roses: functional and molecular characterization of the rdr1 locus.

Diro Terefe-Ayana, Aneela Yasmin, Thanh Loan Le, Helgard Kaufmann, Anja Biber, Astrid Kühr, Marcus Linde, Thomas Debener

Abstract read
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Article in Frontiers in plant science, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Recent Progress in Enhancing Fungal Disease Resistance in Ornamental Plants.International journal of molecular sciences · 2021
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. IdentifyingFrontiers in plant science · 2019
    Article
  11. Article
  12. Review
  13. Article
  14. Genome structure of Rosa multiflora, a wild ancestor of cultivated roses.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
  15. Article
  16. Article
  17. Article
4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Diro Terefe-AyanaInstitute for Plant Genetics, Leibniz University Hannover Hannover, Germany.
Aneela Yasmin
Thanh Loan Le
Helgard Kaufmann
Anja Biber
Astrid Kühr
Marcus Linde
Thomas Debener

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interaction of roses with the leaf spot pathogen Diplocarpon rosae (the cause of black spot on roses) is an interesting pathosystem because it involves a long-lived woody perennial, with life history traits very different from most model plants, and a hemibiotrophic pathogen with moderate levels of gene flow. Here we present data on the molecular structure of the first monogenic dominant resistance gene from roses, Rdr1, directed against one isolate of D. rosae. Complete sequencing of the locus carrying the Rdr1 gene resulted in a sequence of 265,477 bp with a cluster of nine highly related TIR-NBS-LRR (TNL) candidate genes. After sequencing revealed candidate genes for Rdr1, we implemented a gene expression analysis and selected five genes out of the nine TNLs. We then silenced the whole TNL gene family using RNAi (Rdr1-RNAi) constructed from the most conserved sequence region and demonstrated a loss of resistance in the normally resistant genotype. To identify the functional TNL gene, we further screened the five TNL candidate genes with a transient leaf infiltration assay. The transient expression assay indicated a single TNL gene (muRdr1H), partially restoring resistance in the susceptible genotype. Rdr1 was found to localize within the muRdr1 gene family; the genes within this locus contain characteristic motifs of active TNL genes and belong to a young cluster of R genes. The transient leaf assay can be used to further analyze the rose black spot interaction and its evolution, extending the analyses to additional R genes and to additional pathogenic types of the pathogen.

Indexed as

Diplocarpon rosaediseaseRdr1Rosatransient assaywoody plant

Identifiers

PMID22639591
PMCPMC3355636

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.