Evidence map›Paper›PMID 22639141›Full record

ArticleApplied microbiology and biotechnology2013

Identification and characterization of new Δ-17 fatty acid desaturases.

Zhixiong Xue, Hongxian He, Dieter Hollerbach, Daniel J Macool, Narendra S Yadav, Hongxiang Zhang, Bogdan Szostek, Quinn Zhu

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Structural Determinants of Substrate Specificity of Omega-3 Desaturases fromInternational journal of molecular sciences · 2019
    Article
  8. Article
  9. Characterization of an Omega-3 Desaturase FromFrontiers in microbiology · 2018
    Article
  10. The cytoprotective effects of Δ-17 fatty acid desaturase on injured HUVECs and its underlying mechanism.Saudi pharmaceutical journal : SPJ : the official publication of the Saudi Pharmaceutical Society · 2017
    Article
  11. Cytoprotective Effects and Mechanisms of Δ-17 Fatty Acid Desaturase in Injured Human Umbilical Vein Endothelial Cells (HUVECs).Medical science monitor : international medical journal of experimental and clinical research · 2017
    Article
  12. Article
  13. Review
  14. Snf1 is a regulator of lipid accumulation in Yarrowia lipolytica.Applied and environmental microbiology · 2013
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zhixiong XueBiochemical Science and Engineering, Central Research and Development, E. I. DuPont de Nemours, Experimental Station, Wilmington, DE 19880, USA. zhixiong.xue@usa.dupont.com
Hongxian He
Dieter Hollerbach
Daniel J Macool
Narendra S Yadav
Hongxiang Zhang
Bogdan Szostek
Quinn Zhu
DuPont (United States) · USExperimental Station · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ω-3 fatty acid desaturase is a key enzyme for the biosynthesis of ω-3 polyunsaturated fatty acids via the oxidative desaturase/elongase pathways. Here we report the identification of three ω-3 desaturases from oomycetes, Pythium aphanidermatum, Phytophthora sojae, and Phytophthora ramorum. These new ω-3 desaturases share 55 % identity at the amino acid level with the known Δ-17 desaturase of Saprolegnia diclina, and about 31 % identity with the bifunctional Δ-12/Δ-15 desaturase of Fusarium monoliforme. The three enzymes were expressed in either wild-type or codon optimized form in an engineered arachidonic acid producing strain of Yarrowia lipolytica to study their activity and substrate specificity. All three were able to convert the ω-6 arachidonic acid to the ω-3 eicosapentanoic acid, with a substrate conversion efficiency of 54-65 %. These enzymes have a broad ω-6 fatty acid substrate spectrum, including both C18 and C20 ω-6 fatty acids although they prefer the C20 substrates, and have strong Δ-17 desaturase activity but weaker Δ-15 desaturase activity. Thus, they belong to the Δ-17 desaturase class. Unlike the previously identified bifunctional Δ-12/Δ-15 desaturase from F. monoliforme, they lack Δ-12 desaturase activity. The newly identified Δ-17 desaturases could use fatty acids in both acyl-CoA and phospholipid fraction as substrates. The identification of these Δ-17 desaturases provides a set of powerful new tools for genetic engineering of microbes and plants to produce ω-3 fatty acids, such as eicosapentanoic acid and docosahexanoic acid, at high levels.

Indexed as

Amino Acid SequenceArachidonic AcidBiotransformationCloning, MolecularEicosapentaenoic AcidFatty Acid DesaturasesGene ExpressionModels, MolecularMolecular Sequence DataPhytophthoraPythiumRecombinant ProteinsSaprolegniaSequence AlignmentSequence Homology, Amino AcidSubstrate SpecificityArachidonic AcidEicosapentaenoic AcidFatty Acid Desaturasesomega-3 fatty acid desaturaseRecombinant Proteins

Identifiers

PMID22639141
PMCPMC3570762
OpenAlexW1999620003

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.