Evidence map›Paper›PMID 22635988›Full record

ArticleApplied and environmental microbiology2012

A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003.

Pablo Alvarez-Martin, Matilde Fernández, Mary O'Connell-Motherway, Kerry Joan O'Connell, Nicolas Sauvageot, Gerald F Fitzgerald, John MacSharry, Aldert Zomer, Douwe van Sinderen

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Stress Response in Bifidobacteria.Microbiology and molecular biology reviews : MMBR · 2022
    Review
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pablo Alvarez-MartinAlimentary Pharmabiotic Centre, National University of Ireland, Cork, Ireland.
Matilde Fernández
Mary O'Connell-Motherway
Kerry Joan O'Connell
Nicolas Sauvageot
Gerald F Fitzgerald
John MacSharry
Aldert Zomer
Douwe van Sinderen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This work reports on the identification and molecular characterization of the two-component regulatory system (2CRS) PhoRP, which controls the response to inorganic phosphate (P(i)) starvation in Bifidobacterium breve UCC2003. The response regulator PhoP was shown to bind to the promoter region of pstSCAB, specifying a predicted P(i) transporter system, as well as that of phoU, which encodes a putative P(i)-responsive regulatory protein. This interaction is assumed to cause transcriptional modulation under conditions of P(i) limitation. Our data suggest that the phoRP genes are subject to positive autoregulation and, together with pstSCAB and presumably phoU, represent the complete regulon controlled by the phoRP-encoded 2CRS in B. breve UCC2003. Determination of the minimal PhoP binding region combined with bioinformatic analysis revealed the probable recognition sequence of PhoP, designated here as the PHO box, which together with phoRP is conserved among many high-GC-content Gram-positive bacteria. The importance of the phoRP 2CRS in the response of B. breve to P(i) starvation conditions was confirmed by analysis of a B. breve phoP insertion mutant which exhibited decreased growth under phosphate-limiting conditions compared to its parent strain UCC2003.

Indexed as

Bacterial ProteinsBifidobacteriumBinding SitesComputational BiologyElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialMicroarray AnalysisMutagenesis, InsertionalOligonucleotidesPhosphatesPhosphate Transport ProteinsPhosphorylationReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSignal TransductionTransformation, GeneticBacterial ProteinsOligonucleotidesPhoP protein, BacteriaPhosphatesPhosphate Transport Proteins

Identifiers

PMID22635988
PMCPMC3416448

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.