Evidence map›Paper›PMID 22634212›Full record

ArticleJournal of neuroscience methods2012

Genetically encoded fluorescent voltage sensors using the voltage-sensing domain of Nematostella and Danio phosphatases exhibit fast kinetics.

Bradley J Baker, Lei Jin, Zhou Han, Lawrence B Cohen, Marko Popovic, Jelena Platisa, Vincent Pieribone

Open access · greenAbstract read
In one paragraph

Article in Journal of neuroscience methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Genetically Encoded Voltage Indicators: Opportunities and Challenges.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2016
    Review
  11. Review
  12. Article
  13. Article
  14. Genetically Encoded Voltage Indicators in Circulation Research.International journal of molecular sciences · 2015
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Bradley J BakerCenter for Functional Connectomics, Korean Institute of Science and Technology, Seoul, Republic of Korea. bradbaker@kist.re.kr
Lei Jin
Zhou Han
Lawrence B Cohen
Marko Popovic
Jelena Platisa
Vincent Pieribone
Yale University · USJohn B. Pierce Laboratory · USKorea Institute of Science and Technology · KR

Funding

Optical Studies of Neuron Activity and OrganizationR01DC005259 · NIDCD · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2002 to 2019
$5.4M
Scan of Protein Space for Optical Voltage ProbesU24NS057631 · NINDS · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2007 to 2011
$5.2M
High-Speed, wide field fluorescent imaging of cortex in freely moving animalsR01NS065110 · NINDS · JOHN B. PIERCE LABORATORY, INC. · PI CULURCIELLO, EUGENIO, PIERIBONE, VINCENT A · 2009 to 2015
$3.7M
Optical Studies of Neuron Activity and OrganizationR56DC005259 · NIDCD · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2007 to 2007
$413k
NIDCD NIH HHS DC005259NIDCD NIH HHS R01 DC005259NIDCD NIH HHS R56 DC005259NINDS NIH HHS ARRA R01NS065110NINDS NIH HHS ARRA U24NS057631-03S1NINDS NIH HHS R01 NS065110NINDS NIH HHS U24 NS057631NINDS NIH HHS U24NS057631
6 · The paper itself

Abstract

A substantial increase in the speed of the optical response of genetically encoded fluorescent protein voltage sensors (FP voltage sensors) was achieved by using the voltage-sensing phosphatase genes of Nematostella vectensis and Danio rerio. A potential N. vectensis voltage-sensing phosphatase was identified in silico. The voltage-sensing domain (S1-S4) of the N. vectensis homolog was used to create an FP voltage sensor called Nema. By replacing the phosphatase with a cerulean/citrine FRET pair, a new FP voltage sensor was synthesized with fast off kinetics (Tau(off)<5ms). However, the signal was small (ΔF/F=0.4%/200mV). FP voltage sensors using the D. rerio voltage-sensing phosphatase homolog, designated Zahra and Zahra 2, exhibited fast on and off kinetics within 2ms of the time constants observed with the organic voltage-sensitive dye, di4-ANEPPS. Mutagenesis of the S4 region of the Danio FP voltage sensor shifted the voltage dependence to more negative potentials but did not noticeably affect the kinetics of the optical signal.

Indexed as

Action PotentialsAmino Acid SequenceAnimalsEnzyme ActivationFluorescent DyesGenetic EngineeringHEK293 CellsHumansKineticsLuminescent ProteinsMolecular Sequence DataMutagenesisPatch-Clamp TechniquesPhosphoric Monoester HydrolasesProtein Structure, TertiarySea AnemonesFluorescent DyesLuminescent ProteinsPhosphoric Monoester Hydrolases

Identifiers

PMID22634212
PMCPMC3398169
OpenAlexW1973478499

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.