Evidence map›Paper›PMID 22634004›Full record

ArticleBiochemical and biophysical research communications2012

Evaluation of substrate and inhibitor binding to yeast and human isoprenylcysteine carboxyl methyltransferases (Icmts) using biotinylated benzophenone-containing photoaffinity probes.

Kalub Hahne, Jeffrey S Vervacke, Liza Shrestha, James L Donelson, Richard A Gibbs, Mark D Distefano, Christine A Hrycyna

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. a-Factor: a chemical biology tool for the study of protein prenylation.Current topics in peptide & protein research · 2017
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Kalub HahneDepartment of Chemistry, Purdue University, West Lafayette, IN 47907, USA.
Jeffrey S Vervacke
Liza Shrestha
James L Donelson
Richard A Gibbs
Mark D Distefano
Christine A Hrycyna

Funding

MECHANISM AND FUNCTION OF PROTEIN PRENYLATIONR01GM058842 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI DISTEFANO, MARK D · 1998 to 2010
$2.6M
Enzymatic Protein LabelingR01GM084152 · NIGMS · UNIVERSITY OF MINNESOTA · PI DISTEFANO, MARK D · 2010 to 2019
$2.6M
Structure, Function and Conformational Dynamics of the Ste14p MethyltransferaseR01GM106082 · NIGMS · PURDUE UNIVERSITY · PI HRYCYNA, CHRISTINE A · 2013 to 2017
$1.4M
NIGMS NIH HHS R01 GM058842NIGMS NIH HHS R01 GM084152NIGMS NIH HHS R01 GM106082
6 · The paper itself

Abstract

Isoprenylcysteine carboxyl methyltransferases (Icmts) are a class of integral membrane protein methyltransferases localized to the endoplasmic reticulum (ER) membrane in eukaryotes. The Icmts from human (hIcmt) and Saccharomyces cerevisiae (Ste14p) catalyze the α-carboxyl methyl esterification step in the post-translational processing of CaaX proteins, including the yeast a-factor mating pheromones and both human and yeast Ras proteins. Herein, we evaluated synthetic analogs of two well-characterized Icmt substrates, N-acetyl-S-farnesyl-L-cysteine (AFC) and the yeast a-factor peptide mating pheromone, that contain photoactive benzophenone moieties in either the lipid or peptide portion of the molecule. The AFC based-compounds were substrates for both hIcmt and Ste14p, whereas the a-factor analogs were only substrates for Ste14p. However, the a-factor analogs were found to be micromolar inhibitors of hIcmt. Together, these data suggest that the Icmt substrate binding site is dependent upon features in both the isoprenyl moiety and upstream amino acid composition. Furthermore, these data suggest that hIcmt and Ste14p have overlapping, yet distinct, substrate specificities. Photocrosslinking and neutravidin-agarose capture experiments with these analogs revealed that both hIcmt and Ste14p were specifically photolabeled to varying degrees with all of the compounds tested. Our data suggest that these analogs will be useful for the future identification of the Icmt substrate binding sites.

Indexed as

AcetylcysteineBenzophenonesBinding SitesBiotinylationEnzyme InhibitorsHumansMating FactorPeptidesPhotoaffinity LabelsProtein MethyltransferasesSaccharomyces cerevisiaeSubstrate SpecificityAcetylcysteinebenzophenoneBenzophenonesEnzyme InhibitorsMating FactorN-acetyl-S-farnesylcysteinePeptidesPhotoaffinity LabelsProtein Methyltransferasesprotein-S-isoprenylcysteine O-methyltransferase

Identifiers

PMID22634004
PMCPMC3718205

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.