Evidence map›Paper›PMID 22633416›Full record

ArticleChemistry & biology2012

Tailoring enzymes involved in the biosynthesis of angucyclines contain latent context-dependent catalytic activities.

Pekka Patrikainen, Pauli Kallio, Keqiang Fan, Karel D Klika, Khaled A Shaaban, Pekka Mäntsälä, Jürgen Rohr, Keqian Yang, Jarmo Niemi, Mikko Metsä-Ketelä

Abstract read
In one paragraph

Article in Chemistry & biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  12. Review
  13. Divergent evolution of an atypical S-adenosyl-l-methionine-dependent monooxygenase involved in anthracycline biosynthesis.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Pekka PatrikainenDepartment of Biochemistry and Food Chemistry, University of Turku, 20014 Turku, Finland.
Pauli Kallio
Keqiang Fan
Karel D Klika
Khaled A Shaaban
Pekka Mäntsälä
Jürgen Rohr
Keqian Yang
Jarmo Niemi
Mikko Metsä-Ketelä

Funding

NOVEL AUREOLIC ACID TYPE ANTITUMOR AGENTSR01CA091901 · NCI · UNIVERSITY OF KENTUCKY · PI ROHR, JURGEN T · 2001 to 2017
$3.6M
BIOSYNTHETIC KEY STEPS OF ANGUCYCLINE ANTITUMOR DRUGSR01CA102102 · NCI · UNIVERSITY OF KENTUCKY · PI ROHR, JURGEN T · 2005 to 2009
$1.3M
NCI NIH HHS CA091901NCI NIH HHS CA102102NCI NIH HHS R01 CA091901NCI NIH HHS R01 CA102102
6 · The paper itself

Abstract

Comparison of homologous angucycline modification enzymes from five closely related Streptomyces pathways (pga, cab, jad, urd, lan) allowed us to deduce the biosynthetic steps responsible for the three alternative outcomes: gaudimycin C, dehydrorabelomycin, and 11-deoxylandomycinone. The C-12b-hydroxylated urdamycin and gaudimycin metabolites appear to be the ancestral representatives from which landomycins and jadomysins have evolved as a result of functional divergence of the ketoreductase LanV and hydroxylase JadH, respectively. Specifically, LanV has acquired affinity for an earlier biosynthetic intermediate resulting in a switch in biosynthetic order and lack of hydroxyls at C-4a and C-12b, whereas in JadH, C-4a/C-12b dehydration has evolved into an independent secondary function replacing C-12b hydroxylation. Importantly, the study reveals that many of the modification enzymes carry several alternative, hidden, or ancestral catalytic functions, which are strictly dependent on the biosynthetic context.

Indexed as

AminoglycosidesAnthraquinonesAnti-Bacterial AgentsGlycosyltransferasesMixed Function OxygenasesNaphthoquinonesOligosaccharidesStreptomyces lividansAminoglycosidesAnthraquinonesAnti-Bacterial Agentsgaudimycin CGlycosyltransferaseslandomycinoneLanV enzyme, StreptomycesMixed Function OxygenasesNaphthoquinonesOligosaccharidesurdamycin C

Identifiers

PMID22633416
PMCPMC3361699

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.