Evidence map›Paper›PMID 22632036›Full record

ArticleGut pathogens2012

Effects of indole on drug resistance and virulence of Salmonella enterica serovar Typhimurium revealed by genome-wide analyses.

Eiji Nikaido, Etienne Giraud, Sylvie Baucheron, Suguru Yamasaki, Agnès Wiedemann, Kousuke Okamoto, Tatsuya Takagi, Akihito Yamaguchi, Axel Cloeckaert, Kunihiko Nishino

Open access · goldAbstract read
In one paragraph

Article in Gut pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
8.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
  2. Review
  3. Indole decreases the virulence of enterotoxigenic Escherichia coli.World journal of microbiology & biotechnology · 2026
    Article
  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Infection strategies ofGut microbes reports · 2026
    Review
  10. Indole signaling inGut microbes · 2025
    Review
  11. Article
  12. Review
  13. Article
  14. Indole-3-acetic acid (IAA) protectsApplied and environmental microbiology · 2025
    Article
  15. mSystems · 2024
    Article
  16. Unusual Evolution of Cephalopod Tryptophan Indole-Lyases.Journal of molecular evolution · 2023
    Article
  17. Article
  18. Review
  19. Review
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Eiji Nikaido *Laboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan.
Etienne Giraud *INRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.
Sylvie BaucheronINRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.
Suguru YamasakiLaboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan.
Agnès WiedemannINRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.
Kousuke OkamotoGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan.
Tatsuya TakagiGraduate School of Pharmaceutical Sciences, Osaka University, Suita, Osaka, Japan.
Akihito YamaguchiDepartment of Cell Membrane Biology, Institute of Scientific and Industrial Research, Osaka University, Ibaraki, Osaka, Japan.
Axel CloeckaertINRA, UMR1282 Infectiologie et Santé Publique, F-37380, Nouzilly, France.
Kunihiko NishinoLaboratory of Microbiology and Infectious Diseases, Institute of Scientific and Industrial Research, Osaka University, 8-1 Mihogaoka, Ibaraki, Osaka, 567-00447, Japan.
Osaka University · JPInfectiologie Animale et Santé Publique · FRUniversité de Tours · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMany Gram-positive and Gram-negative bacteria produce large quantities of indole as an intercellular signal in microbial communities. Indole demonstrated to affect gene expression in Escherichia coli as an intra-species signaling molecule. In contrast to E. coli, Salmonella does not produce indole because it does not harbor tnaA, which encodes the enzyme responsible for tryptophan metabolism. Our previous study demonstrated that E. coli-conditioned medium and indole induce expression of the AcrAB multidrug efflux pump in Salmonella enterica serovar Typhimurium for inter-species communication; however, the global effect of indole on genes in Salmonella remains unknown.

resultsTo understand the complete picture of genes regulated by indole, we performed DNA microarray analysis of genes in the S. enterica serovar Typhimurium strain ATCC 14028s affected by indole. Predicted Salmonella phenotypes affected by indole based on the microarray data were also examined in this study. Indole induced expression of genes related to efflux-mediated multidrug resistance, including ramA and acrAB, and repressed those related to host cell invasion encoded in the Salmonella pathogenicity island 1, and flagella production. Reduction of invasive activity and motility of Salmonella by indole was also observed phenotypically.

conclusionOur results suggest that indole is an important signaling molecule for inter-species communication to control drug resistance and virulence of S. enterica.

Identifiers

PMID22632036
PMCPMC3405474
OpenAlexW2118307652

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.