Evidence map›Paper›PMID 22629404›Full record

ArticlePloS one2012

Sensitivity of PCR assays for murine gammaretroviruses and mouse contamination in human blood samples.

Li Ling Lee, Lin Lin, David S Bell, Susan Levine, Maureen R Hanson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Li Ling LeeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, New York, United States of America.
Lin Lin
David S Bell
Susan Levine
Maureen R Hanson
Cornell University · USUniversity at Buffalo, State University of New York · US

Funding

The Relationship of XMRV to Functional Status and Co-infections in Chronic FatiguR21AI090553 · NIAID · CORNELL UNIVERSITY · PI HANSON, MAUREEN REBECCA · 2010 to 2011
$422k
NIAID NIH HHS 1R21AI090553NIAID NIH HHS R21 AI090553
6 · The paper itself

Abstract

Gammaretroviruses related to murine leukemia virus (MLV) have variously been reported to be present or absent in blood from chronic fatigue syndrome/myalgic encephalomyelitis (CFS/ME) patients and healthy controls. Using subjects from New York State, we have investigated by PCR methods whether MLV-related sequences can be identified in nucleic acids isolated from whole blood or from peripheral blood mononuclear cells (PBMCs) or following PBMC culture. We have also passaged the prostate cancer cell line LNCaP following incubation with plasma from patients and controls and assayed nucleic acids for viral sequences. We have used 15 sets of primers that can effectively amplify conserved regions of murine endogenous and exogenous retrovirus sequences. We demonstrate that our PCR assays for MLV-related gag sequences and for mouse DNA contamination are extremely sensitive. While we have identified MLV-like gag sequences following PCR on human DNA preparations, we are unable to conclude that these sequences originated in the blood samples.

Indexed as

DNA ContaminationAnimalsDNA, ViralHumansLeukemia Virus, MurineMicePolymerase Chain ReactionSensitivity and SpecificityDNA, Viral

Identifiers

PMID22629404
PMCPMC3357399
OpenAlexW2075735573

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.