Evidence map›Paper›PMID 22629259›Full record

ArticleFrontiers in plant science2011

Sequence Variation and Expression Analysis of Seed Dormancy- and Germination-Associated ABA- and GA-Related Genes in Rice Cultivars.

Fei Liu, Hangxiao Zhang, Gang Wu, Jing Sun, Lili Hao, Xiaomeng Ge, Jun Yu, Weiwei Wang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.4field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Metabolic Profiling in Tuberous Roots ofPlants (Basel, Switzerland) · 2023
    Article
  2. Article
  3. Article
  4. ABA Metabolism and Homeostasis in Seed Dormancy and Germination.International journal of molecular sciences · 2021
    Review
  5. Article
  6. Article
  7. Metabolic Profile and Performance Responses ofFrontiers in plant science · 2020
    Article
  8. Article
  9. Photosynthesis inFrontiers in plant science · 2019
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Fei LiuCAS Key Laboratory of Genome Science and Information, Beijing Institute of Genomics, Chinese Academy of Sciences Beijing, China.
Hangxiao Zhang
Gang Wu
Jing Sun
Lili Hao
Xiaomeng Ge
Jun Yu
Weiwei Wang
Chinese Academy of Sciences · CNBeijing Institute of Genomics · CNUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abscisic acid (ABA) and Gibberellic acid (GA) play key roles in regulating seed dormancy and germination. First, when examining germination of different rice cultivars, we found that their germination timing and dormancy status are rather distinct, coupled with different GA/ABA ratio. Second, we studied genomic sequences of ABA and GA dormancy- and germination-associated genes in rice and discovered single nucleotide polymorphisms and insertions/deletions (Indels) in both coding and regulatory sequences. We aligned all these variations to the genome assemblies of 9311 and PA64s and demonstrated their relevance to seed dormancy both quantitatively and qualitatively based on gene expression data. Third, we surveyed and compared differentially expressed genes in dry seeds between 9311 and PA64s to show that these differentially expressed genes may play roles in seed dormancy and germination.

Indexed as

ABAdormancy and germinationGA

Identifiers

PMID22629259
PMCPMC3355514
OpenAlexW1993774580

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.