ArticleTheScientificWorldJournal2012
New insights in the sugarcane transcriptome responding to drought stress as revealed by superSAGE.
Article in TheScientificWorldJournal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Comparative physiological and transcriptome analysis in cultivated and wild sugarcane species in response to hydrogen peroxide-induced oxidative stress.BMC genomics · 2023Article
- A short review on sugarcane: its domestication, molecular manipulations and future perspectives.Genetic resources and crop evolution · 2022Review
- Differential response of physiology and metabolic response to drought stress in different sweetpotato cultivars.PloS one · 2022Article
- Proteomics Reveals an Increase in the Abundance of Glycolytic and Ethanolic Fermentation Enzymes in Developing Sugarcane Culms During Sucrose Accumulation.Frontiers in plant science · 2021Article
- Comparative analysis of drought-responsive transcriptomes of sugarcane genotypes with differential tolerance to drought.3 Biotech · 2020Article
- Chloroplast (Cp) Transcriptome of P. davidiana Dode×P. bolleana Lauch provides insight into the Cp drought response and Populus Cp phylogeny.BMC evolutionary biology · 2020Article
- Network Analyses and Data Integration of Proteomics and Metabolomics From Leaves of Two Contrasting Varieties of Sugarcane in Response to Drought.Frontiers in plant science · 2019Article
- Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement.Frontiers in plant science · 2018Review
- Analysis of transcription factors among differentially expressed genes induced by drought stress in Populus davidiana.3 Biotech · 2017Article
- Transcriptome Analysis of Taxillusi chinensis (DC.) Danser Seeds in Response to Water Loss.PloS one · 2017Article
- Validation of novel reference genes for reverse transcription quantitative real-time PCR in drought-stressed sugarcane.TheScientificWorldJournal · 2014Article
- Expression Analysis of Sugarcane Aquaporin Genes under Water Deficit.Journal of nucleic acids · 2013Article
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Authors and funding
9 authors.
Funding
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Abstract
In the scope of the present work, four SuperSAGE libraries have been generated, using bulked root tissues from four drought-tolerant accessions as compared with four bulked sensitive genotypes, aiming to generate a panel of differentially expressed stress-responsive genes. Both groups were submitted to 24 hours of water deficit stress. The SuperSAGE libraries produced 8,787,315 tags (26 bp) that, after exclusion of singlets, allowed the identification of 205,975 unitags. Most relevant BlastN matches comprised 567,420 tags, regarding 75,404 unitags with 164,860 different ESTs. To optimize the annotation efficiency, the Gene Ontology (GO) categorization was carried out for 186,191 ESTs (BlastN against Uniprot-SwissProt), permitting the categorization of 118,208 ESTs (63.5%). In an attempt to elect a group of the best tags to be validated by RTqPCR, the GO categorization of the tag-related ESTs allowed the in silico identification of 213 upregulated unitags responding basically to abiotic stresses, from which 145 presented no hits after BlastN analysis, probably concerning new genes still uncovered in previous studies. The present report analyzes the sugarcane transcriptome under drought stress, using a combination of high-throughput transcriptome profiling by SuperSAGE with the Solexa sequencing technology, allowing the identification of potential target genes during the stress response.
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