Evidence map›Paper›PMID 22628567›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Eukaryotic elongation factor 1 complex subunits are critical HIV-1 reverse transcription cofactors.

Kylie Warren, Ting Wei, Dongsheng Li, Fangyun Qin, David Warrilow, Min-Hsuan Lin, Haran Sivakumaran, Ann Apolloni, Catherine M Abbott, Alun Jones and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 60 citations in OpenAlex.

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  10. Frontiers in immunology · 2023
    Article
  11. Review
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  14. Seneca Valley Virus 3CPathogens (Basel, Switzerland) · 2020
    Article
  15. International journal of molecular sciences · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 5 countries.

Kylie WarrenDepartment of Cell and Molecular Biology, Queensland Institute of Medical Research, Herston, Queensland, 4029, Australia.
Ting Wei
Dongsheng Li
Fangyun Qin
David Warrilow
Min-Hsuan Lin
Haran Sivakumaran
Ann Apolloni
Catherine M Abbott
Alun Jones
Jenny L Anderson
David Harrich
QIMR Berghofer Medical Research Institute · AUUniversity of Queensland · AUGuangxi Center for Disease Prevention and Control · CNOffice of Infectious Diseases · USQueensland Health · AUWestern General Hospital · GBWestern Sydney University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellular proteins have been implicated as important for HIV-1 reverse transcription, but whether any are reverse transcription complex (RTC) cofactors or affect reverse transcription indirectly is unclear. Here we used protein fractionation combined with an endogenous reverse transcription assay to identify cellular proteins that stimulated late steps of reverse transcription in vitro. We identified 25 cellular proteins in an active protein fraction, and here we show that the eEF1A and eEF1G subunits of eukaryotic elongation factor 1 (eEF1) are important components of the HIV-1 RTC. eEF1A and eEF1G were identified in fractionated human T-cell lysates as reverse transcription cofactors, as their removal ablated the ability of active protein fractions to stimulate late reverse transcription in vitro. We observed that the p51 subunit of reverse transcriptase and integrase, two subunits of the RTC, coimmunoprecipitated with eEF1A and eEF1G. Moreover eEF1A and eEF1G associated with purified RTCs and colocalized with reverse transcriptase following infection of cells. Reverse transcription in cells was sharply down-regulated when eEF1A or eEF1G levels were reduced by siRNA treatment as a result of reduced levels of RTCs in treated cells. The combined evidence indicates that these eEF1 subunits are critical RTC stability cofactors required for efficient completion of reverse transcription. The identification of eEF1 subunits as unique RTC components provides a basis for further investigations of reverse transcription and trafficking of the RTC to the nucleus.

Indexed as

Cell LineChromatography, LiquidDown-RegulationElectrophoresis, Polyacrylamide GelHIV-1HIV Reverse TranscriptaseHumansImmunoprecipitationPeptide Elongation Factor 1RNA, Small InterferingTandem Mass SpectrometryTranscription, GeneticHIV Reverse TranscriptasePeptide Elongation Factor 1reverse transcriptase, Human immunodeficiency virus 1RNA, Small Interfering

Identifiers

PMID22628567
PMCPMC3386134
OpenAlexW2088279551

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.