ArticleProceedings. Biological sciences2012
Insect phylogenomics: results, problems and the impact of matrix composition.
Article in Proceedings. Biological sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed, 44 citations in OpenAlex.
- Construction of a Species-Level Tree of Life for the Insects and Utility in Taxonomic Profiling.Systematic biology · 2017Article
- Fossil record of stem groups employed in evaluating the chronogram of insects (Arthropoda: Hexapoda).Scientific reports · 2016Article
- Molecular phylogeny of Polyneoptera (Insecta) inferred from expanded mitogenomic data.Scientific reports · 2016Article
- Progress, pitfalls and parallel universes: a history of insect phylogenetics.Journal of the Royal Society, Interface · 2016Review
- Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models.Genome biology and evolution · 2016Article
- Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample.Molecular biology and evolution · 2015Article
- Insect phylogenomics.Insect molecular biology · 2015Review
- The spinning apparatus of webspinners--functional-morphology, morphometrics and spinning behaviour.Scientific reports · 2015Article
- Higher-level phylogeny of paraneopteran insects inferred from mitochondrial genome sequences.Scientific reports · 2015Article
- The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera.BMC genomics · 2014Article
- Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut.BMC genomics · 2014Article
- PhyloTreePruner: A Phylogenetic Tree-Based Approach for Selection of Orthologous Sequences for Phylogenomics.Evolutionary bioinformatics online · 2013Article
- Targeted enrichment: maximizing orthologous gene comparisons across deep evolutionary time.PloS one · 2013Article
- A unique box in 28S rRNA is shared by the enigmatic insect order Zoraptera and Dictyoptera.PloS one · 2013Article
- Insect phylogenomics: exploring the source of incongruence using new transcriptomic data.Genome biology and evolution · 2012Article
Corrections and comments
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In this study, we investigated the relationships among insect orders with a main focus on Polyneoptera (lower Neoptera: roaches, mantids, earwigs, grasshoppers, etc.), and Paraneoptera (thrips, lice, bugs in the wide sense). The relationships between and within these groups of insects are difficult to resolve because only few informative molecular and morphological characters are available. Here, we provide the first phylogenomic expressed sequence tags data ('EST': short sub-sequences from a c(opy) DNA sequence encoding for proteins) for stick insects (Phasmatodea) and webspinners (Embioptera) to complete published EST data. As recent EST datasets are characterized by a heterogeneous distribution of available genes across taxa, we use different rationales to optimize the data matrix composition. Our results suggest a monophyletic origin of Polyneoptera and Eumetabola (Paraneoptera + Holometabola). However, we identified artefacts of tree reconstruction (human louse Pediculus humanus assigned to Odonata (damselflies and dragonflies) or Holometabola (insects with a complete metamorphosis); mayfly genus Baetis nested within Neoptera), which were most probably rooted in a data matrix composition bias due to the inclusion of sequence data of entire proteomes. Until entire proteomes are available for each species in phylogenomic analyses, this potential pitfall should be carefully considered.
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