Evidence map›Paper›PMID 22625849›Full record

ArticleThe Biochemical journal2012

Upstream stimulatory factor 1 activates GATA5 expression through an E-box motif.

Bohao Chen, Rona Hsu, Zhenping Li, Paul C Kogut, Qingxia Du, Kelly Rouser, Blanca Camoretti-Mercado, Julian Solway

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Bohao ChenSection of Pulmonary and Critical Medicine, Department of Medicine, University of Chicago, 5841 S. Maryland Avenue, Chicago, IL 60637, USA. bchen@medicine.bsd.uchicago.edu
Rona Hsu
Zhenping Li
Paul C Kogut
Qingxia Du
Kelly Rouser
Blanca Camoretti-Mercado
Julian Solway
University of Chicago · US

Funding

HLA-G - LILRB - SHP2 Axis in Airway Smooth MuscleR01HL097805 · NHLBI · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2009 to 2012
$2.1M
Multidisciplinary Research Training in Asthma Genetics & GenomicsK12HL090003 · NHLBI · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2007 to 2012
$2.0M
Plasticity Regulation of Contracted Airway Smooth MuscleR01HL079398 · NHLBI · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2005 to 2008
$1.4M
NHLBI NIH HHS K12 HL 090003NHLBI NIH HHS K12 HL090003NHLBI NIH HHS R01 HL 079398NHLBI NIH HHS R01 HL079398NHLBI NIH HHS R01 HL 097805NHLBI NIH HHS R01 HL097805
6 · The paper itself

Abstract

Silencing of GATA5 gene expression as a result of promoter hypermethylation has been observed in lung, gastrointestinal and ovarian cancers. However, the regulation of GATA5 gene expression has been poorly understood. In the present study, we have demonstrated that an E (enhancer)-box in the GATA5 promoter (bp -118 to -113 in mice; bp -164 to -159 in humans) positively regulates GATA5 transcription by binding USF1 (upstream stimulatory factor 1). Using site-directed mutagenesis, EMSA (electrophoretic mobility-shift analysis) and affinity chromatography, we found that USF1 specifically binds to the E-box sequence (5'-CACGTG-3'), but not to a mutated E-box. CpG methylation of this E-box significantly diminished its binding of transcription factors. Mutation of the E-box within a GATA5 promoter fragment significantly decreased promoter activity in a luciferase reporter assay. Chromatin immunoprecipitation identified that USF1 physiologically interacts with the GATA5 promoter E-box in mouse intestinal mucosa, which has the highest GATA5 gene expression in mouse. Co-transfection with a USF1 expression plasmid significantly increased GATA5 promoter-driven luciferase transcription. Furthermore, real-time and RT (reverse transcription)-PCR analyses confirmed that overexpression of USF1 activates endogenous GATA5 gene expression in human bronchial epithelial cells. The present study provides the first evidence that USF1 activates GATA5 gene expression through the E-box motif and suggests a potential mechanism (disruption of the E-box) by which GATA5 promoter methylation reduces GATA5 expression in cancer.

Indexed as

E-Box ElementsPromoter Regions, GeneticAnimalsBinding SitesBronchiEpithelial CellsGATA5 Transcription FactorHumansIntestinal MucosaMiceRegulatory Sequences, Nucleic AcidUpstream Stimulatory FactorsGATA5 protein, humanGata5 protein, mouseGATA5 Transcription FactorUpstream Stimulatory FactorsUsf1 protein, mouse

Identifiers

PMID22625849
PMCPMC3677829
OpenAlexW2162603019

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.