ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2012
Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
9 citing papers in PubMed.
- High-resolution association mapping with libraries of immortalized lines from ancestral landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a North European grain maize program.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
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- Linkage disequilibrium, SNP frequency change due to selection, and association mapping in popcorn chromosome regions containing QTLs for quality traits.Genetics and molecular biology · 2016Article
- Dent and Flint maize diversity panels reveal important genetic potential for increasing biomass production.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- A MITE transposon insertion is associated with differential methylation at the maize flowering time QTL Vgt1.G3 (Bethesda, Md.) · 2014Article
- Article
- Gene-based single nucleotide polymorphism markers for genetic and association mapping in common bean.BMC genetics · 2012Article
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Authors and funding
14 authors.
Funding
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Abstract
Recent progress in genotyping and resequencing techniques have opened new opportunities for deciphering quantitative trait variation by looking for associations between traits of interest and polymorphisms in panels of diverse inbred lines. Association mapping raises specific issues related to the choice of appropriate (i) panels and marker-densities and (ii) statistical methods to capture associations. In this study, we used a panel of 314 maize inbred lines from the dent pool, composed of inbred material from public institutes (113 inbred lines) and a private company (201 inbred lines). We showed that local LD was higher and genetic diversity lower in the material of private origin than in the public material. We compared the results obtained by different software for identifying population structure and computing relatedness among lines, and ran association tests for earliness related traits. Our results confirmed the importance of the mite polymorphism of Vgt1 on flowering time, but also showed that its effect can be captured by zmRap2.7 polymorphisms located 70 kb apart. We also highlighted associations with polymorphisms within genes putatively involved in lignin biosynthesis pathway, which deserve further investigations.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.