Evidence map›Paper›PMID 22622285›Full record

ArticleChannels (Austin, Tex.)

Tryptophan scanning mutagenesis reveals distortions in the helical structure of the δM4 transmembrane domain of the Torpedo californica nicotinic acetylcholine receptor.

Daniel Caballero-Rivera, Omar A Cruz-Nieves, Jessica Oyola-Cintrón, David A Torres-Nunez, Jose D Otero-Cruz, José A Lasalde-Dominicci

Open access · goldAbstract read
In one paragraph

Article in Channels (Austin, Tex.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Daniel Caballero-RiveraDepartment of Chemistry; University of Puerto Rico, Rio Piedras Campus, San Juan, Puerto Rico.
Omar A Cruz-Nieves
Jessica Oyola-Cintrón
David A Torres-Nunez
Jose D Otero-Cruz
José A Lasalde-Dominicci
University of Puerto Rico at Río Piedras · PR

Funding

Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
The Role of Sensory Input to Mammalian Locomotion After the Loss of supraspinal.P20GM103642 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LASALDE-DOMINICCI, JOSE ANTONIO · 2013 to 2023
$20.6M
Immunopathogenesis of HIV Neurological DisordersU54NS043011 · NINDS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI KRAISELBURD, EDMUNDO NELSON · 2001 to 2011
$14.6M
LIPID INTERACTIONS ALTER ACETYLCHOLINE RECEPTORR01GM056371 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI LASALDE-DOMINICCI, JOSE A · 1997 to 2005
$1.3M
NIGMS NIH HHS 2R01GM56371-12NIGMS NIH HHS 2 R25 GM061151NIGMS NIH HHS P20 GM103642NIGMS NIH HHS R01 GM056371NIGMS NIH HHS R25 GM061151NINDS NIH HHS 2U54NS43011NINDS NIH HHS U54 NS043011
6 · The paper itself

Abstract

The lipid-protein interface is an important domain of the nicotinic acetylcholine receptor (nAChR) that has recently garnered increased relevance. Several studies have made significant advances toward determining the structure and dynamics of the lipid-exposed domains of the nAChR. However, there is still a need to gain insight into the mechanism by which lipid-protein interactions regulate the function and conformational transitions of the nAChR. In this study, we extended the tryptophan scanning mutagenesis (TrpScanM) approach to dissect secondary structure and monitor the conformational changes experienced by the δM4 transmembrane domain (TMD) of the Torpedo californica nAChR, and to identify which positions on this domain are potentially linked to the regulation of ion channel kinetics. The difference in oscillation patterns between the closed- and open-channel states suggests a substantial conformational change along this domain as a consequence of channel activation. Furthermore, TrpScanM revealed distortions along the helical structure of this TMD that are not present on current models of the nAChR. Our results show that a Thr-Pro motif at positions 462-463 markedly bends the helical structure of the TMD, consistent with the recent crystallographic structure of the GluCl Cys-loop receptor which reveals a highly bent TMD4 in each subunit. This Thr-Pro motif acts as a molecular hinge that delineates two gating blocks in the δM4 TMD. These results suggest a model in which a hinge-bending motion that tilts the helical structure is combined with a spring-like motion during transition between the closed- and open-channel states of the δM4 TMD.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAnimalsBungarotoxinsIon Channel GatingMolecular Sequence DataMutagenesis, Site-DirectedOocytesPatch-Clamp TechniquesProtein Structure, SecondaryProtein Structure, TertiaryReceptors, NicotinicStructure-Activity RelationshipTorpedoTryptophanXenopus laevisBungarotoxinsReceptors, NicotinicTryptophan

Identifiers

PMID22622285
PMCPMC3396688
OpenAlexW2022878025

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.