Evidence map›Paper›PMID 22619379›Full record

ArticleHuman molecular genetics2012

Microarray expression analysis and identification of serum biomarkers for Niemann-Pick disease, type C1.

Celine V M Cluzeau, Dawn E Watkins-Chow, Rao Fu, Bhavesh Borate, Nicole Yanjanin, Michelle K Dail, Cristin D Davidson, Steven U Walkley, Daniel S Ory, Christopher A Wassif and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 91 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. The Unique Phenotype of Lipid-Laden Macrophages.International journal of molecular sciences · 2021
    Review
  18. Review
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Celine V M CluzeauProgram in Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services, Bethesda, MD 20892, USA.
Dawn E Watkins-Chow
Rao Fu
Bhavesh Borate
Nicole Yanjanin
Michelle K Dail
Cristin D Davidson
Steven U Walkley
Daniel S Ory
Christopher A Wassif
William J Pavan
Forbes D Porter
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USNational Human Genome Research Institute · USAlbert Einstein College of Medicine · USJohn F. Kennedy Center for the Performing Arts · USWashington University in St. Louis · US

Funding

Inborn Errors of Cholesterol SynthesisZIAHD000139 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI PORTER, FORBES · 2009 to 2019
$11.7M
Endosomal-Lysosomal Function in Neuronal Storage DiseaseR01HD045561 · NICHD · ALBERT EINSTEIN COL OF MED YESHIVA UNIV · PI DOBRENIS, KOSTANTIN, WALKLEY, STEVEN UPSHAW · 2004 to 2021
$6.9M
THE USE OF THE MOUSE NPC MODEL TO CLONE THE HUMAN DISEASE GENEZIAHG000068 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI PAVAN, WILLIAM J · 2009 to 2023
$6.0M
Clinical Investigations of Niemann-Pick Disease, type CZIAHD008824 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI PORTER, FORBES · 2009 to 2019
$5.2M
Substrate Reduction Therapies for Niemann-Pick C DiseaseR01NS053677 · NINDS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DOBRENIS, KOSTANTIN, WALKLEY, STEVEN UPSHAW · 2006 to 2016
$3.3M
Intramural NIH HHSNICHD NIH HHS R01 HD045561NINDS NIH HHS NS053677NINDS NIH HHS R01 NS053677
6 · The paper itself

Abstract

Niemann-Pick disease type C (NPC) is a lysosomal storage disorder characterized by liver disease and progressive neurodegeneration. Deficiency of either NPC1 or NPC2 leads to the accumulation of cholesterol and glycosphingolipids in late endosomes and early lysosomes. In order to identify pathological mechanisms underlying NPC and uncover potential biomarkers, we characterized liver gene expression changes in an Npc1 mouse model at six ages spanning the pathological progression of the disease. We identified altered gene expression at all ages, including changes in asymptomatic, 1-week-old mice. Biological pathways showing early altered gene expression included: lipid metabolism, cytochrome P450 enzymes involved in arachidonic acid and drug metabolism, inflammation and immune responses, mitogen-activated protein kinase and G-protein signaling, cell cycle regulation, cell adhesion and cytoskeleton remodeling. In contrast, apoptosis and oxidative stress appeared to be late pathological processes. To identify potential biomarkers that could facilitate monitoring of disease progression, we focused on a subset of 103 differentially expressed genes that encode secreted proteins. Further analysis identified two secreted proteins with increased serum levels in NPC1 patients: galectin-3 (LGALS3), a pro-inflammatory molecule, and cathepsin D (CTSD), a lysosomal aspartic protease. Elevated serum levels of both proteins correlated with neurological disease severity and appeared to be specific for NPC1. Expression of Lgals3 and Ctsd was normalized following treatment with 2-hydroxypropyl-β-cyclodextrin, a therapy that reduces pathological findings and significantly increases Npc1(-/-) survival. Both LGALS3 and CTSD have the potential to aid in diagnosis and serve as biomarkers to monitor efficacy in therapeutic trials.

Indexed as

2-Hydroxypropyl-beta-cyclodextrinAdolescentAge FactorsAnimalsbeta-CyclodextrinsBiomarkersCase-Control StudiesCathepsin DChildChild, PreschoolCytochrome P-450 Enzyme SystemDisease Models, AnimalFemaleGalectin 3HumansInfant2-Hydroxypropyl-beta-cyclodextrinbeta-CyclodextrinsBiomarkersCathepsin DCtsd protein, mouseCytochrome P-450 Enzyme SystemGalectin 3Intracellular Signaling Peptides and ProteinsLgals3 protein, mouseNiemann-Pick C1 ProteinNpc1 protein, mouseProteins

Identifiers

PMID22619379
PMCPMC3406758
OpenAlexW2143142801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.