ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012
Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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Who cites it
46 citing papers in PubMed, 101 citations in OpenAlex.
- Light photon flux density affects ethanol-mediated drought avoidance in cassava (Plant biotechnology (Tokyo, Japan) · 2025Article
- Progress and Impacts of "Omics" Technologies in Understanding the Drought Response in Cassava: Adoption for Food Security in Africa.Plant-environment interactions (Hoboken, N.J.) · 2025Review
- An optimization method for measuring the stomata in cassava (Open life sciences · 2024Article
- Fully sequencing the cassava full-length cDNA library reveals unannotated transcript structures and alternative splicing events in regions with a high density of single nucleotide variations, insertions-deletions, and heterozygous sequences.Plant molecular biology · 2023Article
- Ethanol treatment enhances drought stress avoidance in cassava (Manihot esculenta Crantz).Plant molecular biology · 2022Article
- Integrative omics approaches revealed a crosstalk among phytohormones during tuberous root development in cassava.Plant molecular biology · 2022Article
- MeSPL9 attenuates drought resistance by regulating JA signaling and protectant metabolite contents in cassava.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Integrating Omics and Gene Editing Tools for Rapid Improvement of Traditional Food Plants for Diversified and Sustainable Food Security.International journal of molecular sciences · 2021Review
- Diversity of the Bacterial Microbiome Associated With the Endosphere and Rhizosphere of Different Cassava (Frontiers in microbiology · 2021Article
- Exploring dynamic protein-protein interactions in cassava through the integrative interactome network.Scientific reports · 2020Article
- An optimized isolation protocol yields high-quality RNA from cassava tissues (FEBS open bio · 2019Article
- Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava.BMC genomics · 2019Article
- Acetic Acid Treatment Enhances Drought Avoidance in Cassava (Frontiers in plant science · 2019Article
- Unlocking conserved and diverged metabolic characteristics in cassava carbon assimilation via comparative genomics approach.Scientific reports · 2018Article
- Comparison of leaf transcriptomes of cassava "Xinxuan 048" diploid and autotetraploid plants.Genes & genomics · 2018Article
- Genome-Wide Identification and Expression Analysis of the KUP Family under Abiotic Stress in Cassava (Frontiers in physiology · 2018Article
- The early transcriptome response of cassava (Manihot esculenta Crantz) to mealybug (Phenacoccus manihoti) feeding.PloS one · 2018Article
- The Discrepant and Similar Responses of Genome-Wide Transcriptional Profiles between Drought and Cold Stresses in Cassava.International journal of molecular sciences · 2017Article
- Prediction of cassava protein interactome based on interolog method.Scientific reports · 2017Article
- Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava.Scientific reports · 2017Article
Corrections and comments
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Authors and funding
12 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Cassava is an important crop that provides food security and income generation in many tropical countries and is known for its adaptability to various environmental conditions. Despite its global importance, the development of cassava microarray tools has not been well established. Here, we describe the development of a 60-mer oligonucleotide Agilent microarray representing ∼20,000 cassava genes and how it can be applied to expression profiling under drought stress using three cassava genotypes (MTAI16, MECU72 and MPER417-003). Our results identified about 1300 drought stress up-regulated genes in cassava and indicated that cassava has similar mechanisms for drought stress response and tolerance as other plant species. These results demonstrate that our microarray is a useful tool for analysing the cassava transcriptome and that it is applicable for various cassava genotypes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.