Evidence map›Paper›PMID 22618876›Full record

ArticleNucleic acids research2012

Comparative genomic and proteomic analyses of PE/PPE multigene family of Mycobacterium tuberculosis H₃₇Rv and H₃₇Ra reveal novel and interesting differences with implications in virulence.

Sakshi Kohli, Yadvir Singh, Khushbu Sharma, Aditya Mittal, Nasreen Z Ehtesham, Seyed E Hasnain

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
  2. Article
  3. Protein Architecture and Composition in Mycobacterium tuberculosis.Advances in experimental medicine and biology · 2026
    Review
  4. Article
  5. Development of a Vaccine Candidate Based on Surface-Displayed Particles ofInternational journal of molecular sciences · 2025
    Article
  6. Article
  7. World journal of clinical cases · 2024
    Article
  8. PE/PPE Proteome and ESX-5 Substrate Spectrum inInternational journal of molecular sciences · 2024
    Article
  9. Article
  10. Expression of a uniqueFrontiers in microbiology · 2024
    Article
  11. Pangenome Reconstruction ofMicroorganisms · 2023
    Article
  12. Article
  13. Review
  14. TheInternational journal of molecular sciences · 2022
    Review
  15. Article
  16. PGRS Domain of Rv0297 ofInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Frontiers in immunology · 2021
    Article
  19. PGRS Domain of Rv0297 ofFrontiers in cellular and infection microbiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Sakshi KohliKusuma School of Biological Sciences, Indian Institute of Technology, Hauz Khas, New Delhi 110016, India.
Yadvir Singh
Khushbu Sharma
Aditya Mittal
Nasreen Z Ehtesham
Seyed E Hasnain
University of Hyderabad · INIndian Institute of Technology Delhi · INIndian Institute of Technology Hyderabad · INIndian Institute of Technology Indore · INNational Institute of Pathology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tuberculosis, caused by Mycobacterium tuberculosis, remains a leading infectious disease taking one human life every 15 s globally. The two well-characterized strains H(37)Rv and H(37)Ra, derived from the same parental strain M. tuberculosis H(37), show dramatically different pathogenic phenotypes. PE/PPE gene family, comprising of 176 open reading frames and present exclusively in genus Mycobacterium, accounts for ∼10% of the M. tuberculosis genome. Our comprehensive in silico analyses of PE/PPE family of H(37)Ra and virulent H(37)Rv strains revealed genetic differences between these strains in terms of several single nucleotide variations and InDels and these manifested in changes in physico-chemical properties, phosphorylation sites, and protein: protein interacting domains of the corresponding proteomes. Similar comparisons using the 13 sigma factor genes, 36 members of the mammalian cell entry family, 13 mycobacterial membrane protein large family members and 11 two-component signal transduction systems along with 5 orphaned response regulators and 2 orphaned sensor kinases failed to reveal very significant difference between H(37)Rv and H(37)Ra, reinforcing the importance of PE/PPE genes. Many of these changes between H(37)Rv and H(37)Ra can be correlated to differences in pathogenesis and virulence of the two strains.

Indexed as

Multigene FamilyAmino Acid SequenceBacterial ProteinsGenomicsMolecular Sequence DataMycobacterium tuberculosisPhosphorylationProtein Interaction Domains and MotifsProtein StabilityProteomicsVirulenceBacterial Proteins

Identifiers

PMID22618876
PMCPMC3424577
OpenAlexW2105399633

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.