Evidence map›Paper›PMID 22613800›Full record

ArticleJournal of theoretical biology2012

Formation of BCR oligomers provides a mechanism for B cell affinity discrimination.

Philippos K Tsourkas, Das Somkanya C, Paul Yu-Yang, Wanli Liu, Susan K Pierce, Subhadip Raychaudhuri

Abstract read
In one paragraph

Article in Journal of theoretical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Role of B cells as antigen presenting cells.Frontiers in immunology · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Spatial Stochastic Model of the Pre-B Cell Receptor.IEEE/ACM transactions on computational biology and bioinformatics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Philippos K TsourkasDept. of Biomedical Engineering, University of California, Davis, One Shields Avenue, Davis, CA 95616, USA.
Das Somkanya C
Paul Yu-Yang
Wanli Liu
Susan K Pierce
Subhadip Raychaudhuri
University of California, Davis · US

Funding

The Initiation of B-Cell SignalingZIAAI000898 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI PIERCE, SUSAN · 2009 to 2025
$30.9M
A novel computational model of B cell signaling and activationR01AI074022 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BENHAM, CRAIG J. · 2008 to 2011
$1.1M
NIAID NIH HHS R01 AI074022
6 · The paper itself

Abstract

B cells encounter antigen over a wide affinity range, from K(A)=10(5) M(-1) to K(A)=10(10) M(-1). The strength of B cell antigen receptor (BCR) signaling in response to antigen increases with affinity, a process known as "affinity discrimination". In this work, we use a computational simulation of B cell surface dynamics and membrane-proximal signaling to show that affinity discrimination can arise from the formation of BCR oligomers. It is known that BCRs form oligomers upon encountering antigen, and that the size and rate of formation of these oligomers both increase with affinity. In our simulation, we have introduced a requirement that only BCR-antigen complexes that are part of an oligomer can engage cytoplasmic signaling molecules such as Src-family kinases. Our simulation shows that as affinity increases, BCR signaling activity increases in addition to the number of collected antigen. Our results are also consistent with the existence of an experimentally-observed threshold affinity of activation at K(A)=10(5)-10(6) M(-1) (no signaling activity below this affinity value) and affinity discrimination ceiling of K(A)=10(10) M(-1) (no affinity discrimination above this affinity value). Comparison with experiments shows that the time scale of BCR oligomer formation predicted by our model (less than 10 s) is well within the time scale of experimentally observed association of BCR with Src-family kinases (10-20 s).

Indexed as

AnimalsAntibody AffinityAntigensB-LymphocytesComputer SimulationIntracellular Signaling Peptides and ProteinsKineticsModels, ImmunologicalPhosphorylationProtein MultimerizationProtein Structure, QuaternaryProtein-Tyrosine KinasesReceptors, Antigen, B-CellSignal TransductionSyk KinaseTime FactorsAntigensIntracellular Signaling Peptides and ProteinsProtein-Tyrosine KinasesReceptors, Antigen, B-CellSyk Kinase

Identifiers

PMID22613800
PMCPMC3699317
OpenAlexW2148527075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.