Evidence map›Paper›PMID 22609769›Full record

ArticleNanotechnology2012

Chemical recognition and binding kinetics in a functionalized tunnel junction.

Shuai Chang, Shuo Huang, Hao Liu, Peiming Zhang, Feng Liang, Rena Akahori, Shengqin Li, Brett Gyarfas, John Shumway, Brian Ashcroft and 2 more

Abstract read
In one paragraph

Article in Nanotechnology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
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  4. Review
  5. Review
  6. Role of contacts in long-range protein conductance.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Shuai ChangDepartment of Physics, Arizona State University, Tempe, AZ 85287, USA. schang23@asu.edu
Shuo Huang
Hao Liu
Peiming Zhang
Feng Liang
Rena Akahori
Shengqin Li
Brett Gyarfas
John Shumway
Brian Ashcroft
Jin He
Stuart Lindsay

Funding

Instrument to Optimize DNA Sequencing by Recognition TunnelingR01HG006323 · NHGRI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LINDSAY, STUART · 2011 to 2015
$5.0M
Sequencing by RecognitionR21HG004378 · NHGRI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LINDSAY, STUART · 2007 to 2009
$1.5M
Tunnel Junction for reading all four bases with high discriminationR21HG005851 · NHGRI · ARIZONA STATE UNIVERSITY-TEMPE CAMPUS · PI LINDSAY, STUART · 2010 to 2012
$868k
NHGRI NIH HHS R01 HG006323NHGRI NIH HHS R21 HG004378NHGRI NIH HHS R21 HG005851
6 · The paper itself

Abstract

4(5)-(2-mercaptoethyl)-1H-imidazole-2-carboxamide is a molecule that has multiple hydrogen bonding sites and a short flexible linker. When tethered to a pair of electrodes, it traps target molecules in a tunnel junction. Surprisingly large recognition-tunneling signals are generated for all naturally occurring DNA bases A, C, G, T and 5-methyl-cytosine. Tunnel current spikes are stochastic and broadly distributed, but characteristic enough so that individual bases can be identified as a tunneling probe is scanned over DNA oligomers. Each base yields a recognizable burst of signal, the duration of which is controlled entirely by the probe speed, down to speeds of 1 nm s -1, implying a maximum off-rate of 3 s -1 for the recognition complex. The same measurements yield a lower bound on the on-rate of 1 M -1 s -1. Despite the stochastic nature of the signals, an optimized multiparameter fit allows base calling from a single signal peak with an accuracy that can exceed 80% when a single type of nucleotide is present in the junction, meaning that recognition-tunneling is capable of true single-molecule analysis. The accuracy increases to 95% when multiple spikes in a signal cluster are analyzed.

Indexed as

SemiconductorsBinding SitesConductometryEquipment DesignEquipment Failure AnalysisKineticsNanostructuresNucleotidesOligonucleotide Array Sequence AnalysisParticle SizeNucleotides

Identifiers

PMID22609769
PMCPMC3392519

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.