Evidence map›Paper›PMID 22609626›Full record

ArticleNature methods2012

Facile backbone structure determination of human membrane proteins by NMR spectroscopy.

Christian Klammt, Innokentiy Maslennikov, Monika Bayrhuber, Cédric Eichmann, Navratna Vajpai, Ellis Jeremy Chua Chiu, Katherine Y Blain, Luis Esquivies, June Hyun Jung Kwon, Bartosz Balana and 6 more

Abstract read
In one paragraph

Article in Nature methods, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
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  5. Article
  6. Article
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  10. Article
  11. Regulation of Heme Synthesis by Mitochondrial Homeostasis Proteins.Frontiers in cell and developmental biology · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  18. Article
  19. Structural basis of mitochondrial dysfunction in response to cytochromeProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  20. Highly Coarse-Grained Representations of Transmembrane Proteins.Journal of chemical theory and computation · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

Christian KlammtStructural Biology Laboratory, Salk Institute for Biological Studies, La Jolla, California, USA.
Innokentiy Maslennikov
Monika Bayrhuber
Cédric Eichmann
Navratna Vajpai
Ellis Jeremy Chua Chiu
Katherine Y Blain
Luis Esquivies
June Hyun Jung Kwon
Bartosz Balana
Ursula Pieper
Andrej Sali
Paul A Slesinger
Witek Kwiatkowski
Roland Riek
Senyon Choe
Salk Institute for Biological Studies · USGachon University · KRQB3 · USETH Zurich · CH

Funding

The NYSGRC: A Large Scale Center for PSI:BiologyU54GM094662 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI SEIDEL, RONALD D · 2010 to 2014
$32.6M
Project 6 (Holton)U54GM094625 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2010 to 2014
$8.0M
Structural Analysis of Alcohol-dependent Activation of GIRKsR01AA018734 · NIAAA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Paul A Slesinger · 2010 to 2026
$6.6M
Protein Modeling by Satisfaction of Spatial RestraintsR01GM054762 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2001 to 2008
$2.1M
High-speed NMR methods for membrane protein analysisR01GM098630 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHOE, SENYON · 2011 to 2014
$1.4M
Cell-free expression of human integral membrane proteins for structural studiesR01GM095623 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CHOE, SENYON · 2010 to 2013
$1.2M
PROTEIN MODELING BY SATISFACTION OF SPATIAL RESTRAINTSR29GM054762 · NIGMS · ROCKEFELLER UNIVERSITY · PI SALI, ANDREJ · 1996 to 2000
$111k
NIAAA NIH HHS R01 AA018734NIGMS NIH HHS GM094625NIGMS NIH HHS GM094662NIGMS NIH HHS GM095623NIGMS NIH HHS GM098630NIGMS NIH HHS GM54762NIGMS NIH HHS R01 GM054762NIGMS NIH HHS R01 GM095623NIGMS NIH HHS R01 GM098630NIGMS NIH HHS R29 GM054762NIGMS NIH HHS U54 GM094625NIGMS NIH HHS U54 GM094662
6 · The paper itself

Abstract

Although nearly half of today's major pharmaceutical drugs target human integral membrane proteins (hIMPs), only 30 hIMP structures are currently available in the Protein Data Bank, largely owing to inefficiencies in protein production. Here we describe a strategy for the rapid structure determination of hIMPs, using solution NMR spectroscopy with systematically labeled proteins produced via cell-free expression. We report new backbone structures of six hIMPs, solved in only 18 months from 15 initial targets. Application of our protocols to an additional 135 hIMPs with molecular weight <30 kDa yielded 38 hIMPs suitable for structural characterization by solution NMR spectroscopy without additional optimization.

Indexed as

Databases, ProteinHumansMembrane ProteinsModels, MolecularMolecular WeightNuclear Magnetic Resonance, BiomolecularProtein ConformationMembrane Proteins

Identifiers

PMID22609626
PMCPMC3723349
OpenAlexW2106335202

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.