Evidence map›Paper›PMID 22607542›Full record

ArticleJournal of the American Chemical Society2012

9-Mercaptodethiobiotin is generated as a ligand to the [2Fe-2S]+ cluster during the reaction catalyzed by biotin synthase from Escherichia coli.

Corey J Fugate, Troy A Stich, Esther G Kim, William K Myers, R David Britt, Joseph T Jarrett

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

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  9. Density functional theory calculations on the active site of biotin synthase: mechanism of S transfer from the Fe(2)S(2) cluster and the role of 1st and 2nd sphere residues.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
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  20. Emerging themes in radical SAM chemistry.Current opinion in structural biology · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Corey J FugateDepartment of Chemistry, University of Hawai'i at Manoa, Honolulu, 96822, United States.
Troy A Stich
Esther G Kim
William K Myers
R David Britt
Joseph T Jarrett
University of California, Davis · USUniversity of Hawaiʻi at Mānoa · US

Funding

EPR Studies of Biological PCET ElementsR01GM073789 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI BRITT, R DAVID · 2005 to 2008
$1.0M
MULTIFREQUENCY EPR/ENDOR SPECTROMETER: TSE, PRIONS10RR021075 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI BRITT, R DAVID · 2005 to 2005
$500k
NCRR NIH HHS S10 RR021075NCRR NIH HHS S10-RR021075NIGMS NIH HHS GM73789NIGMS NIH HHS R01 GM073789
6 · The paper itself

Abstract

Biotin synthase catalyzes formation of the thiophane ring through stepwise substitution of a sulfur atom for hydrogen atoms at the C9 and C6 positions of dethiobiotin. Biotin synthase is a radical S-adenosylmethionine (SAM) enzyme that reductively cleaves S-adenosylmethionine, generating 5'-deoxyadenosyl radicals that initially abstract a hydrogen atom from the C9 position of dethiobiotin. We have proposed that the resulting dethiobiotinyl radical is quenched by the μ-sulfide of the nearby [2Fe-2S](2+) cluster, resulting in coupled formation of 9-mercaptodethiobiotin and a reduced [2Fe-2S](+) cluster. This reduced FeS cluster is observed by electron paramagnetic resonance spectroscopy as a mixture of two orthorhombic spin systems. In the present work, we use isotopically labeled 9-mercaptodethiobiotin and enzyme to probe the ligand environment of the [2Fe-2S](+) cluster in this reaction intermediate. Hyperfine sublevel correlation spectroscopy (HYSCORE) spectra exhibit strong cross-peaks demonstrating strong isotropic coupling of the nuclear spin with the paramagnetic center. The hyperfine coupling constants are consistent with a structural model for the reaction intermediate in which 9-mercaptodethiobiotin is covalently coordinated to the remnant [2Fe-2S](+) cluster.

Indexed as

BiocatalysisBiotinEscherichia coli ProteinsIron-Sulfur ProteinsLigandsMolecular StructureSulfurtransferases9-mercaptodethiobiotinBiotinbiotin synthase, E coliEscherichia coli ProteinsIron-Sulfur ProteinsLigandsSulfurtransferases

Identifiers

PMID22607542
PMCPMC3418058
OpenAlexW1987974436

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.