Evidence map›Paper›PMID 22605977›Full record

ArticleInternational journal of molecular sciences2012

CARD15/NOD2, CD14 and toll-like 4 receptor gene polymorphisms in Saudi patients with Crohn's Disease.

Nahla Azzam, Howaida Nounou, Othman Alharbi, Abedulrahman Aljebreen, Manal Shalaby

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 23 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
  6. Review
  7. Saudi consensus guidance for the management of inflammatory bowel disease during pregnancy.Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. A cross-sectional survey of multi-generation inflammatory bowel disease consanguinity and its relationship with disease onset.Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association
    Article
  13. Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Nahla AzzamDepartment of Internal Medicine, Division of Gastroenterology, Faculty of Medicine, University King Saud, Riyadh 11461, Saudi Arabia.
Howaida NounouDepartment of Biochemistry, Faculty of Medicine, University of Alexandria, Alexandria 21111, Egypt.
Othman AlharbiDepartment of Internal Medicine, Division of Gastroenterology, Faculty of Medicine, University King Saud, Riyadh 11461, Saudi Arabia.
Abedulrahman AljebreenDepartment of Internal Medicine, Division of Gastroenterology, Faculty of Medicine, University King Saud, Riyadh 11461, Saudi Arabia.
Manal ShalabyDepartment of Biochemistry, Faculty of Science, King Saud University, Riyadh 11495, Saudi Arabia.
King Saud University · SAAlexandria University · EG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crohn's disease (CD) is a multifactorial disease with a genetic component and an observed association with genes related to the innate immune response. Polymorphisms in the CARD15/NOD2 gene, in addition to functional variants of the toll-like receptor-4 (TLR4) and CD14 genes, have been associated with the development of Crohn's disease. There is no information about the frequency of these polymorphisms in the Saudi population. We examined the frequency of the three major CARD15/NOD2 risk alleles (Leu1007fsinsC, Arg702Trp, and Gly908Arg) and the TLR4 (Thr399Il) polymorphism as well as a functional polymorphism in the promoter of the CD14-159C/T in 46 Saudi CD patients and 50 matched controls. Genotyping was performed by allele-specific PCR or by restriction fragment length polymorphism (PCR-RFLP) analysis. The mutant genotype frequencies of the Leu1007fsinsC, Arg702Trp and Gly908Arg in the patient group were 6.5, 21.7 and 6.5%, respectively, compared with frequencies of 0, 4 and 2%, respectively, in the control group. There were 15 patients who carried the mutant alleles for all three CARD15/NOD2 variants, Leu1007fsinsC, Arg702Trp and Gly908Arg, while none of the control candidates carried the three alleles. This genetic study provides evidence that the three major CARD15/NOD2 variant alleles and the CD14 -159C/T polymorphism are associated with Crohn's disease (CD) susceptibility in the Saudi population; however, there is no evidence that the TLR4 (Thr399Il) or CARD15/NOD2 polymorphisms can be considered risk factors for Crohn's disease.

Indexed as

Gene FrequencyAdolescentAdultAgedAllelesCrohn DiseaseFemaleGenetic Association StudiesGenetic Predisposition to DiseaseHaplotypesHumansLipopolysaccharide ReceptorsMaleMiddle AgedNod2 Signaling Adaptor ProteinPolymerase Chain ReactionLipopolysaccharide ReceptorsNOD2 protein, humanNod2 Signaling Adaptor ProteinToll-Like Receptor 4CARD15/NOD2Crohn’s diseasegenetic polymorphisminflammatory bowel disease

Identifiers

PMID22605977
PMCPMC3344213
OpenAlexW2124950826

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.