Evidence map›Paper›PMID 22595309›Full record

ArticleJournal of clinical virology : the official publication of the Pan American Society for Clinical Virology2012

Respiratory viral pathogens associated with lower respiratory tract disease among young children in the highlands of Papua New Guinea.

Glenys R Chidlow, Ingrid A Laing, Gerald B Harnett, Andrew R Greenhill, Suparat Phuanukoonnon, Peter M Siba, William S Pomat, Geoffrey R Shellam, David W Smith, Deborah Lehmann

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. High fractional exhaled nitric oxide and sputum eosinophils are associated with an increased risk of future virus-induced exacerbations: A prospective cohort study.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2017
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  11. Child pneumonia - focus on the Western Pacific Region.Paediatric respiratory reviews · 2017
    Review
  12. Article
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  14. Update on Human Rhinovirus and Coronavirus Infections.Seminars in respiratory and critical care medicine · 2016
    Review
  15. Respiratory viruses in young South African children with acute lower respiratory infections and interactions with HIV.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Glenys R ChidlowDepartment of Microbiology, PathWest Laboratory Medicine WA, Nedlands, Australia. glenys.chidlow@health.wa.gov.au
Ingrid A Laing
Gerald B Harnett
Andrew R Greenhill
Suparat Phuanukoonnon
Peter M Siba
William S Pomat
Geoffrey R Shellam
David W Smith
Deborah Lehmann
Papua New Guinea Institute of Medical Research · PGUniversity of Western Australia · AUPathwest Laboratory Medicine · AU

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundAcute lower respiratory tract infections (ALRI) commonly result in fatal outcomes in the young children of Papua New Guinea (PNG). However, comprehensive studies of the viral aetiology of ALRI have not been conducted in PNG for almost 30 years.

objectivesTo determine the viruses associated with ALRI among children living in the PNG highlands using sensitive molecular detection techniques. STUDY

designPernasal swabs were collected routinely between 1 week and 18 months of age and also during episodes of ALRI, as part of a neonatal pneumococcal conjugate vaccine trial. A tandem multiplex real-time PCR assay was used to test for a comprehensive range of respiratory viruses in samples collected from 221 young children. Picornavirus typing was supported by DNA sequence analysis.

resultsRecognized pathogenic respiratory viruses were detected in 198/273 (73%) samples collected from children with no evidence of ALRI and 69/80 (86%) samples collected during ALRI episodes. Human rhinoviruses (HRV) species A, B and C were detected in 152 (56%) samples from non-ALRI children and 50 (63%) samples collected during ALRI episodes. Partial structural region sequences for two new species C rhinoviruses were added to the GenBank database. ALRI was associated with detection of adenovirus species B (p<0.01) or C (p<0.05), influenza A (p<0.0001) or respiratory syncytial virus (p<0.0001). Multiple viruses were detected more often during ALRI episodes (49%) than when children displayed no symptoms of ALRI (18%) (p<0.0001).

conclusionsThe burden of infection with respiratory viruses remains significant in young children living in the PNG highlands.

Indexed as

FemaleHumansInfantInfant, NewbornMaleMolecular Sequence DataMultiplex Polymerase Chain ReactionPapua New GuineaPrevalenceRespiratory Tract DiseasesSequence Analysis, DNAVirus DiseasesViruses

Identifiers

PMID22595309
PMCPMC3383990
OpenAlexW1971654293

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.