Evidence map›Paper›PMID 22593163›Full record

ArticleJournal of virology2012

Sequence and structural characterization of great salt lake bacteriophage CW02, a member of the T7-like supergroup.

Peter S Shen, Matthew J Domek, Eduardo Sanz-García, Aman Makaju, Ryan M Taylor, Ryan Hoggan, Michele D Culumber, Craig J Oberg, Donald P Breakwell, John T Prince and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Isolation and Characterization of the FirstInternational journal of molecular sciences · 2023
    Article
  3. Article
  4. Predicting the capsid architecture of phages from metagenomic data.Computational and structural biotechnology journal · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Great Salt Lake microbiology: a historical perspective.International microbiology : the official journal of the Spanish Society for Microbiology · 2018
    Review
  11. Article
  12. Article
  13. Review
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Peter S ShenDepartment of Chemistry and Biochemistry, Brigham Young University, Provo, Utah, USA.
Matthew J Domek
Eduardo Sanz-García
Aman Makaju
Ryan M Taylor
Ryan Hoggan
Michele D Culumber
Craig J Oberg
Donald P Breakwell
John T Prince
David M Belnap
Brigham Young University · USWeber State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Halophage CW02 infects a Salinivibrio costicola-like bacterium, SA50, isolated from the Great Salt Lake. Following isolation, cultivation, and purification, CW02 was characterized by DNA sequencing, mass spectrometry, and electron microscopy. A conserved module of structural genes places CW02 in the T7 supergroup, members of which are found in diverse aquatic environments, including marine and freshwater ecosystems. CW02 has morphological similarities to viruses of the Podoviridae family. The structure of CW02, solved by cryogenic electron microscopy and three-dimensional reconstruction, enabled the fitting of a portion of the bacteriophage HK97 capsid protein into CW02 capsid density, thereby providing additional evidence that capsid proteins of tailed double-stranded DNA phages have a conserved fold. The CW02 capsid consists of bacteriophage lambda gpD-like densities that likely contribute to particle stability. Turret-like densities were found on icosahedral vertices and may represent a unique adaptation similar to what has been seen in other extremophilic viruses that infect archaea, such as Sulfolobus turreted icosahedral virus and halophage SH1.

Indexed as

CapsidDNA, ViralEcosystemPodoviridaeFresh WaterSequence Analysis, DNAVibrionaceaeDNA, Viral

Identifiers

PMID22593163
PMCPMC3421657
OpenAlexW2089528282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.