Evidence map›Paper›PMID 22593158›Full record

ArticleJournal of virology2012

The structure of an archaeal viral integrase reveals an evolutionarily conserved catalytic core yet supports a mechanism of DNA cleavage in trans.

Brian J Eilers, Mark J Young, C Martin Lawrence

Abstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Viruses of theFrontiers in microbiology · 2023
    Review
  2. Archaeal tyrosine recombinases.FEMS microbiology reviews · 2021
    Review
  3. Article
  4. Article
  5. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  6. Article
  7. Molecular biology of fuselloviruses and their satellites.Extremophiles : life under extreme conditions · 2014
    Review
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Brian J EilersThermal Biology Institute, Montana State University, Bozeman, Montana, USA.
Mark J Young
C Martin Lawrence

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The first structure of a catalytic domain from a hyperthermophilic archaeal viral integrase reveals a minimal fold similar to that of bacterial HP1 integrase and defines structural elements conserved across three domains of life. However, structural superposition on bacterial Holliday junction complexes and similarities in the C-terminal tail with that of eukaryotic Flp suggest that the catalytic tyrosine and an additional active-site lysine are delivered to neighboring subunits in trans. An intramolecular disulfide bond contributes significant thermostability in vitro.

Indexed as

Evolution, MolecularArchaeal VirusesDNA, CruciformDNA NucleotidyltransferasesDNA, ViralEnzyme StabilityIntegrasesProtein Structure, TertiaryViral ProteinsDNA, CruciformDNA NucleotidyltransferasesDNA, ViralFLP recombinaseIntegrasesViral Proteins

Identifiers

PMID22593158
PMCPMC3421663

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.