Evidence map›Paper›PMID 22592657›Full record

ArticleFunctional & integrative genomics2012

New cis-regulatory elements in the Rht-D1b locus region of wheat.

Jialei Duan, Jiajie Wu, Yue Liu, Jianhui Xiao, Guangyao Zhao, Yongqiang Gu, Jizeng Jia, Xiuying Kong

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Functional & integrative genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Characterization of a common wheat (Triticum aestivum L.) high-tillering dwarf mutant.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017
    Article
  3. Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  4. Article
  5. Haplotype dictionary for the Rht-1 loci in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  6. Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Jialei DuanCollege of Biology Sciences, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing, People's Republic of China. duanjl@gmail.com
Jiajie Wu
Yue Liu
Jianhui Xiao
Guangyao Zhao
Yongqiang Gu
Jizeng Jia
Xiuying Kong
Institute of Crop Sciences · CNChinese Academy of Agricultural Sciences · CNChina Agricultural University · CNUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fifteen gene-containing BACs with accumulated length of 1.82-Mb from the Rht-D1b locus region were sequenced and compared in detail with the orthologous regions of rice, sorghum, and maize. Our results show that Rht-D1b represents a conserved genomic region as implied by high gene sequence identity, good maintenance of gene colinearity, and the presence of multiple conserved noncoding sequences (CNSs) that are shared by other grass species. Eight cis-regulatory elements in these CNSs around grass DELLA genes were detected.

Indexed as

Genes, PlantGenetic LociRegulatory Sequences, Nucleic AcidBase SequenceChromosomes, Artificial, BacterialChromosomes, PlantConserved SequenceDNA Transposable ElementsGene OrderGenes, DuplicateMolecular Sequence AnnotationMolecular Sequence DataOryzaPlant ProteinsSequence AlignmentSorghumDNA Transposable ElementsPlant ProteinsRHT-D1A protein, Triticum aestivum

Identifiers

PMID22592657
OpenAlexW2016050645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.