Evidence map›Paper›PMID 22589454›Full record

ArticlePhysiological genomics2012

Genetic locus on mouse chromosome 7 controls elevated heart rate.

Elaine M Smolock, Irina A Ilyushkina, Anatole Ghazalpour, Janice Gerloff, Arkady N Murashev, Aldons J Lusis, Vyacheslav A Korshunov

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Natriuretic Peptide Receptor 2 Locus Contributes to Carotid Remodeling.Journal of the American Heart Association · 2020
    Article
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  18. Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits.Mammalian genome : official journal of the International Mammalian Genome Society · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Elaine M SmolockDepartment of Medicine, Aab Cardiovascular Research Institute, University of Rochester School of Medicine and Dentistry, Rochester, New York 14642, USA.
Irina A Ilyushkina
Anatole Ghazalpour
Janice Gerloff
Arkady N Murashev
Aldons J Lusis
Vyacheslav A Korshunov
University of Rochester · USUniversity of California, Los Angeles · USInstitute of Bioorganic Chemistry · RUPushchino State Institute of Natural Sciences · RU

Funding

ULTRASTRUCTURE OF THE INTIMA IN EARLY LESION FORMATIONP01HL030568 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FOGELMAN, ALAN M · 1985 to 2019
$55.2M
The Role of Immune Response in Vascular Dysfunction in HypertensionR01HL105623 · NHLBI · UNIVERSITY OF ROCHESTER · PI KORSHUNOV, VYACHESLAV A · 2011 to 2015
$1.5M
LIPOPROTEIN METABOLISM GENETIC CONTROL--MOUSE MODELR01HL042488 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 1989 to 1994
–
LIPOPROTEIN METABOLISM GENETIC CONTROL--MOUSE MODELR37HL042488 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 1994 to 1999
–
NHLBI NIH HHS HL-105623NHLBI NIH HHS HL-30568NHLBI NIH HHS HL-42488NHLBI NIH HHS P01 HL030568NHLBI NIH HHS R01 HL105623
6 · The paper itself

Abstract

Elevated heart rate (HR) is a risk factor for cardiovascular diseases. The goal of the study was to map HR trait in mice using quantitative trait locus (QTL) analysis followed by genome-wide association (GWA) analysis. The first approach provides mapping power and the second increases genome resolution. QTL analyses were performed in a C3HeB×SJL backcross. HR and systolic blood pressure (SBP) were measured by the tail-cuff plethysmography. HR was ∼80 beats/min higher in SJL compared with C3HeB. There was a wide distribution of the HR (536-763 beats/min) in N2 mice. We discovered a highly significant QTL (logarithm of odds = 6.7, P < 0.001) on chromosome 7 (41 cM) for HR in the C3HeB×SJL backcross. In the Hybrid Mouse Diversity Panel (58 strains, n = 5-6/strain) we found that HR (beats/min) ranged from 546 ± 12 in C58/J to 717 ± 7 in MA/MyJ mice. SBP (mmHg) ranged from 99 ± 6 in strain I/LnJ to 151 ± 4 in strain BXA4/PgnJ. GWA analyses were done using the HMDP, which revealed a locus (64.2-65.1 Mb) on chromosome 7 that colocalized with the QTL for elevated HR found in the C3HeB×SJL backcross. The peak association was observed for 17 SNPs that are localized within three GABA(A) receptor genes. In summary, we used a combined genetic approach to fine map a novel elevated HR locus on mouse chromosome 7.

Indexed as

Genetic LociQuantitative Trait LociAnimalsChromosomes, MammalianCrosses, GeneticFemaleGenomeGenome-Wide Association StudyGenotypeHeart RateLinkage DisequilibriumMaleMicePolymorphism, Single Nucleotide

Identifiers

PMID22589454
PMCPMC3426427
OpenAlexW2161011275

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.