Evidence map›Paper›PMID 22586276›Full record

ArticleMolecular and cellular biology2012

The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae.

Jessica M Bryant, Jérôme Govin, Liye Zhang, Greg Donahue, B Franklin Pugh, Shelley L Berger

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jessica M BryantDepartment of Cell and Developmental Biology, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jérôme Govin
Liye Zhang
Greg Donahue
B Franklin Pugh
Shelley L Berger
University of Pennsylvania · USPennsylvania State University · US

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
VANADIUM INTERACTION STUDIES IN RELATION TO THE INHIBITION OF NA+-K+-ATPASES06GM008216 · NIGMS · UNIVERSITY OF PUERTO RICO AT HUMACAO · PI ORTIZ-MARCIALES, MARGARITA · 1989 to 2010
$8.0M
High Resolution Mapping of Function Elements in the Yeast GenomeR01HG004160 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI PUGH, B FRANKLIN · 2007 to 2022
$5.3M
Chromatin regulatory mechanisms in eukaryotic gametogenesisR01GM055360 · NIGMS · WISTAR INSTITUTE · PI BERGER, SHELLEY L · 1998 to 2015
$5.1M
High Resolution Mapping of Functional Elements in the Yeast GenomeR56HG004160 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI PUGH, B FRANKLIN · 2017 to 2017
$300k
NHGRI NIH HHS HG004160NHGRI NIH HHS R01 HG004160NHGRI NIH HHS R56 HG004160NIGMS NIH HHS GM055360NIGMS NIH HHS R01 GM055360NIGMS NIH HHS S06 GM008216NIGMS NIH HHS T32 GM008216
6 · The paper itself

Abstract

The differentiation of gametes involves dramatic changes to chromatin, affecting transcription, meiosis, and cell morphology. Sporulation in Saccharomyces cerevisiae shares many chromatin features with spermatogenesis, including a 10-fold compaction of the nucleus. To identify new proteins involved in spore nuclear organization, we purified chromatin from mature spores and discovered a significant enrichment of the linker histone (Hho1). The function of Hho1 has proven to be elusive during vegetative growth, but here we demonstrate its requirement for efficient sporulation and full compaction of the spore genome. Hho1 chromatin immunoprecipitation followed by sequencing (ChIP-seq) revealed increased genome-wide binding in mature spores and provides novel in vivo evidence of the linker histone binding to nucleosomal linker DNA. We also link Hho1 function to the transcription factor Ume6, the master repressor of early meiotic genes. Hho1 and Ume6 are depleted during meiosis, and analysis of published ChIP-chip data obtained during vegetative growth reveals a high binding correlation of both proteins at promoters of early meiotic genes. Moreover, Ume6 promotes binding of Hho1 to meiotic gene promoters. Thus, Hho1 may play a dual role during sporulation: Hho1 and Ume6 depletion facilitates the onset of meiosis via activation of Ume6-repressed early meiotic genes, whereas Hho1 enrichment in mature spores contributes to spore genome compaction.

Indexed as

Base SequenceChromatinDNA, FungalGametogenesisGene Expression Regulation, DevelopmentalGene Expression Regulation, FungalGenes, FungalHistonesMeiosisPromoter Regions, GeneticRepressor ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpores, FungalChromatinDNA, FungalHHO1 protein, S cerevisiaeHistonesRepressor ProteinsSaccharomyces cerevisiae ProteinsUME6 protein, S cerevisiae

Identifiers

PMID22586276
PMCPMC3416202
OpenAlexW2112734915

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.