Evidence map›Paper›PMID 22586085›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Structure, function and inhibition of the two- and three-domain 4Fe-4S IspG proteins.

Yi-Liang Liu, Francisco Guerra, Ke Wang, Weixue Wang, Jikun Li, Cancan Huang, Wei Zhu, Kevin Houlihan, Zhi Li, Yong Zhang and 2 more

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Positioning Bacillus subtilis as terpenoid cell factory.Journal of applied microbiology · 2021
    Review
  8. Article
  9. Uncovering the functional residues ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
  11. Article
  12. Metabolic engineering of Bacillus subtilis for terpenoid production.Applied microbiology and biotechnology · 2015
    Review
  13. Article
  14. Insights into the binding of pyridines to the iron-sulfur enzyme IspH.Journal of the American Chemical Society · 2014
    Article
  15. Review
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

12 authors.

Yi-Liang LiuCenter for Biophysics and Computational Biology, University of Illinois, Urbana, IL 61801, USA.
Francisco Guerra
Ke Wang
Weixue Wang
Jikun Li
Cancan Huang
Wei Zhu
Kevin Houlihan
Zhi Li
Yong Zhang
Satish K Nair
Eric Oldfield

Funding

Structure, Function and Inhibition of [4Fe-4S] ProteinsR01GM065307 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2002 to 2017
$5.4M
NIGMS NIH HHS GM65307NIGMS NIH HHS R01 GM065307
6 · The paper itself

Abstract

IspG is a 4Fe4S protein involved in isoprenoid biosynthesis. Most bacterial IspGs contain two domains: a TIM barrel (A) and a 4Fe4S domain (B), but in plants and malaria parasites, there is a large insert domain (A*) whose structure and function are unknown. We show that bacterial IspGs function in solution as (AB)(2) dimers and that mutations in either both A or both B domains block activity. Chimeras harboring an A-mutation in one chain and a B-mutation in the other have 50% of the activity seen in wild-type protein, because there is still one catalytically active AB domain. However, a plant IspG functions as an AA*B monomer. We propose, using computational modeling and electron microscopy, that the A* insert domain has a TIM barrel structure that interacts with the A domain. This structural arrangement enables the A and B domains to interact in a "cup and ball" manner during catalysis, just as in the bacterial systems. EPR/HYSCORE spectra of reaction intermediate, product, and inhibitor ligands bound to both two and three domain proteins are identical, indicating the same local electronic structure, and computational docking indicates these ligands bridge both A and B domains. Overall, the results are of broad general interest because they indicate the insert domain in three-domain IspGs is a second TIM barrel that plays a structural role and that the pattern of inhibition of both two and three domain proteins are the same, results that can be expected to be of use in drug design.

Indexed as

Protein MultimerizationProtein Structure, TertiaryAlkynesAmino Acid SequenceBacterial ProteinsBinding SitesBiocatalysisComputer SimulationDiphosphatesElectron Spin Resonance SpectroscopyIron-Sulfur ProteinsLigandsMicroscopy, ElectronModels, MolecularMolecular Sequence DataMutationAlkynesBacterial ProteinsDiphosphatesIron-Sulfur ProteinsLigands

Identifiers

PMID22586085
PMCPMC3365180

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.