Evidence map›Paper›PMID 22581861›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

IL-7 functionally segregates the pro-B cell stage by regulating transcription of recombination mediators across cell cycle.

Kristen Johnson, Julie Chaumeil, Mariann Micsinai, Joy M H Wang, Laura B Ramsey, Gisele V Baracho, Robert C Rickert, Francesco Strino, Yuval Kluger, Michael A Farrar and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Regulation of Early Lymphocyte DevelopmentFrontiers in immunology · 2021
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. CHD4 is essential for transcriptional repression and lineage progression in B lymphopoiesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  13. Article
  14. Article
  15. Cell cycle RNA regulons coordinating early lymphocyte development.Wiley interdisciplinary reviews. RNA · 2017
    Review
  16. Dual Mechanism ofMolecular and cellular biology · 2017
    Article
  17. Article
  18. Article
  19. Long-Range Regulation of V(D)J Recombination.Advances in immunology · 2015
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Kristen JohnsonDepartment of Pathology, New York University School of Medicine, New York, NY 10016, USA.
Julie Chaumeil
Mariann Micsinai
Joy M H Wang
Laura B Ramsey
Gisele V Baracho
Robert C Rickert
Francesco Strino
Yuval Kluger
Michael A Farrar
Jane A Skok
New York University · USSanford Burnham Prebys Medical Discovery Institute · USUniversity of Minnesota · USYale Cancer Center · USYale University · US

Funding

Yale Pathology Tissue Services Shared ResourceP30CA016359 · NCI · YALE UNIVERSITY · PI DAVID L RIMM · 1985 to 2026
$85.0M
FUNCTION OF CD19 IN B CELL DEVELOPMENT/DIFFERENTIATIONR01AI041649 · NIAID · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI APGAR, JOHN R · 1998 to 2019
$7.0M
Role Of Nuclear Organization In Protecting Genome Stability During RecombinationR01GM086852 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KLUGER, YUVAL, SKOK, JANE AMANDA · 2008 to 2016
$3.8M
Pre-BCR and STAT5 Signaling in Acute Lymphoblastic LeukemiaR01CA151845 · NCI · UNIVERSITY OF MINNESOTA · PI FARRAR, MICHAEL ARCHIBALD · 2011 to 2015
$1.5M
The role of IL-7 in guiding developing B cells through the pre-B cell check-pointK99GM088408 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI JOHNSON, KRISTEN · 2009 to 2010
$180k
NCI NIH HHS CA-16359NCI NIH HHS R01 CA151845NIAID NIH HHS R01 AI041649NIAID NIH HHS R01AI041649NIGMS NIH HHS K99GM088408-01NIGMS NIH HHS R01 GM086852NIGMS NIH HHS R01GM086852Wellcome Trust
6 · The paper itself

Abstract

Ag receptor diversity involves the introduction of DNA double-stranded breaks during lymphocyte development. To ensure fidelity, cleavage is confined to the G(0)-G(1) phase of the cell cycle. One established mechanism of regulation is through periodic degradation of the RAG2 recombinase protein. However, there are additional levels of protection. In this paper, we show that cyclical changes in the IL-7R signaling pathway functionally segregate pro-B cells according to cell cycle status. In consequence, the level of a downstream effector of IL-7 signaling, phospho-STAT5, is inversely correlated with cell cycle expression of Rag, a key gene involved in recombination. Higher levels of phopho-STAT5 in S-G(2) correlate with decreased Rag expression and Rag relocalization to pericentromeric heterochromatin. These cyclical changes in transcription and locus repositioning are ablated upon transformation with v-Abl, which renders STAT5 constitutively active across the cell cycle. We propose that this activity of the IL-7R/STAT5 pathway plays a critical protective role in development, complementing regulation of RAG2 at the protein level, to ensure that recombination does not occur during replication. Our data, suggesting that pro-B cells are not a single homogeneous population, explain inconsistencies in the role of IL-7 signaling in regulating Igh recombination.

Indexed as

AnimalsB-Lymphocyte SubsetsCell CycleCell DifferentiationFlow CytometryGene Rearrangement, B-Lymphocyte, Heavy ChainGenes, RAG-1Homeodomain ProteinsIn Situ Hybridization, FluorescenceInterleukin-7MiceMicroscopy, ConfocalOligonucleotide Array Sequence AnalysisPrecursor Cells, B-LymphoidReverse Transcriptase Polymerase Chain ReactionSignal TransductionHomeodomain ProteinsInterleukin-7RAG-1 proteinSTAT5 Transcription Factor

Identifiers

PMID22581861
PMCPMC3370098
OpenAlexW2140173610

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.