Evidence map›Paper›PMID 22581770›Full record

ArticleNucleic acids research2012

Bulged DNA substrates for identifying poxvirus resolvase inhibitors.

Matthew Culyba, Young Hwang, Sana Attar, Peter B Madrid, James Bupp, Donna Huryn, Luis Sanchez, Jay Grobler, Michael D Miller, Frederic D Bushman

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Viral Nucleases.Viruses · 2023
    Article
  9. Article
  10. Structure and Metal Binding Properties of a Poxvirus Resolvase.The Journal of biological chemistry · 2016
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Matthew CulybaDepartment of Microbiology, University of Pennsylvania School of Medicine, 3610 Hamilton Walk, Philadelphia, PA 19104-6076, USA.
Young Hwang
Sana Attar
Peter B Madrid
James Bupp
Donna Huryn
Luis Sanchez
Jay Grobler
Michael D Miller
Frederic D Bushman
SRI International · USUniversity of Pennsylvania · US

Funding

Vaccine strategy for broad spectrum protection agains non-typhoidal salmonellU54AI057168 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI WHITE, JUDITH M. · 2003 to 2013
$91.5M
TRAINING IN VIROLOGYT32AI007324 · NIAID · WISTAR INSTITUTE · PI Paul Bates, Matthew D. Weitzman · 1989 to 2026
$6.8M
Broad spectrum therapeutics targeting resolvase enzymesU01AI082015 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI BUSHMAN, FREDERIC D · 2009 to 2010
$2.0M
NIAID NIH HHS T32 AI 07324NIAID NIH HHS U01 U01 AI 082015NIAID NIH HHS U54 AI057168
6 · The paper itself

Abstract

Resolvase enzymes that cleave DNA four-way (Holliday) junctions are required for poxvirus replication, but clinically useful inhibitors have not been developed. Here, we report an assay for resolvase cleavage activity based on fluorescence polarization (FP) for high-throughput screening and mechanistic studies. Initial analysis showed that cleavage of a fluorescently labeled Holliday junction substrate did not yield an appreciable change in FP, probably because the cleavage product did not have sufficiently increased mobility to yield a strong FP signal. Iterative optimization yielded a substrate with an off-center DNA bulge, which after cleavage released a labeled short stand and yielded a greatly reduced FP signal. Using this assay, 133,000 compounds were screened, identifying 1-hydroxy-1,8-naphthyridin-2(1H)-one compounds as inhibitors. Structure-activity studies revealed functional parallels to Food and Drug Administration (FDA)-approved drugs targeting the related human immunodeficiency virus integrase enzyme. Some 1-hydroxy-1,8-naphthyridin-2(1H)-one compounds showed anti-poxvirus activity.

Indexed as

Fluorescence PolarizationDNADNA CleavageDNA, CruciformEnzyme AssaysEnzyme InhibitorsFowlpox virusHolliday Junction ResolvasesNaphthyridinesSmall Molecule LibrariesStructure-Activity Relationship1-hydroxy-1,8-naphthyridin-2(1H)-oneDNADNA, CruciformEnzyme InhibitorsHolliday Junction ResolvasesNaphthyridinesSmall Molecule Libraries

Identifiers

PMID22581770
PMCPMC3439875
OpenAlexW2109906531

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.