Evidence map›Paper›PMID 22581690›Full record

ArticleHuman mutation2012

Toward a mtDNA locus-specific mutation database using the LOVD platform.

Joanna L Elson, Mary G Sweeney, Vincent Procaccio, John W Yarham, Antonio Salas, Qing-Peng Kong, Francois H van der Westhuizen, Robert D S Pitceathly, David R Thorburn, Marie T Lott and 3 more

Abstract read
In one paragraph

Article in Human mutation, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Joanna L ElsonMitochondrial Research Group, Institute for Ageing and Health, The Medical School, Newcastle University, Newcastle upon Tyne, United Kingdom. joanna.elson@ncl.ac.uk
Mary G Sweeney
Vincent Procaccio
John W Yarham
Antonio Salas
Qing-Peng Kong
Francois H van der Westhuizen
Robert D S Pitceathly
David R Thorburn
Marie T Lott
Douglas C Wallace
Robert W Taylor
Robert McFarland

Funding

MITOCHONDRIAL INBORN ERRORS OF METABOLISMR01NS021328 · NINDS · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 1985 to 2017
$6.5M
Obesity and Surgical OutcomesR01DK073671 · NIDDK · CHILDREN'S HOSP OF PHILADELPHIA · PI SILBER, JEFFREY H · 2006 to 2010
$3.1M
Adaptive Physiology of mtDNA Longevity MutationsR01AG024373 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 2004 to 2008
$1.9M
Mitochondrial Diabetes & Manganic Porphyrin TreatmentR01DK073691 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI WALLACE, DOUGLAS C · 2006 to 2010
$1.5M
ANT Defects in Neurodegenerative DiseasesR01NS041850 · NINDS · UNIVERSITY OF CALIFORNIA IRVINE · PI WALLACE, DOUGLAS C · 2001 to 2005
$1.4M
Medical Research Council G0800674Medical Research Council G1000848NIA NIH HHS AG24373NIA NIH HHS R01 AG024373NIDDK NIH HHS DK73671NIDDK NIH HHS R01 DK073671NIDDK NIH HHS R01 DK073691NINDS NIH HHS NS21328NINDS NIH HHS NS41850NINDS NIH HHS R01 NS021328NINDS NIH HHS R01 NS041850Wellcome Trust 074454/Z/04/ZWellcome Trust 096919
6 · The paper itself

Abstract

The Human Variome Project (HVP) is a global effort to collect and curate all human genetic variation affecting health. Mutations of mitochondrial DNA (mtDNA) are an important cause of neurogenetic disease in humans; however, identification of the pathogenic mutations responsible can be problematic. In this article, we provide explanations as to why and suggest how such difficulties might be overcome. We put forward a case in support of a new Locus Specific Mutation Database (LSDB) implemented using the Leiden Open-source Variation Database (LOVD) system that will not only list primary mutations, but also present the evidence supporting their role in disease. Critically, we feel that this new database should have the capacity to store information on the observed phenotypes alongside the genetic variation, thereby facilitating our understanding of the complex and variable presentation of mtDNA disease. LOVD supports fast queries of both seen and hidden data and allows storage of sequence variants from high-throughput sequence analysis. The LOVD platform will allow construction of a secure mtDNA database; one that can fully utilize currently available data, as well as that being generated by high-throughput sequencing, to link genotype with phenotype enhancing our understanding of mitochondrial disease, with a view to providing better prognostic information.

Indexed as

Databases, Nucleic AcidGenetic LociMutationSoftwareComputational BiologyDNA, MitochondrialDNA Mutational AnalysisGenome, HumanGenotypeHigh-Throughput Nucleotide SequencingHumansInformation Storage and RetrievalInternetMitochondrial DiseasesOxidative PhosphorylationPhenotypeDNA, Mitochondrial

Identifiers

PMID22581690
PMCPMC4394605

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.