ArticleBioinformatics (Oxford, England)2012
Software support for SBGN maps: SBGN-ML and LibSBGN.
Article in Bioinformatics (Oxford, England), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
41 citing papers in PubMed.
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- GraphML-SBGN bidirectional converter for metabolic networks.Journal of integrative bioinformatics · 2022Article
- Design considerations for representing systems biology information with the Systems Biology Graphical Notation.Journal of integrative bioinformatics · 2022Article
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- Review
- SBML Level 3: an extensible format for the exchange and reuse of biological models.Molecular systems biology · 2020Review
- Closing the gap between formats for storing layout information in systems biology.Briefings in bioinformatics · 2020Article
- The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).Journal of integrative bioinformatics · 2020Article
- Pathway Commons 2019 Update: integration, analysis and exploration of pathway data.Nucleic acids research · 2020Article
- Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.Network and systems medicine · 2020Review
- Mental-Map Preserving Visualisation of Partitioned Networks in Vanted.Journal of integrative bioinformatics · 2019Article
- Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices.Methods in molecular biology (Clifton, N.J.) · 2019Article
- New perspectives: systems medicine in cardiovascular disease.BMC systems biology · 2018Article
- Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.Journal of integrative bioinformatics · 2018Article
- Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.PLoS computational biology · 2018Article
- Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.NPJ systems biology and applications · 2018Article
- Is systems pharmacology ready to impact upon therapy development? A study on the cholesterol biosynthesis pathway.British journal of pharmacology · 2017Article
Corrections and comments
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Authors and funding
17 authors.
Funding
Abstract
motivationLibSBGN is a software library for reading, writing and manipulating Systems Biology Graphical Notation (SBGN) maps stored using the recently developed SBGN-ML file format. The library (available in C++ and Java) makes it easy for developers to add SBGN support to their tools, whereas the file format facilitates the exchange of maps between compatible software applications. The library also supports validation of maps, which simplifies the task of ensuring compliance with the detailed SBGN specifications. With this effort we hope to increase the adoption of SBGN in bioinformatics tools, ultimately enabling more researchers to visualize biological knowledge in a precise and unambiguous manner. AVAILABILITY AND IMPLEMENTATION: Milestone 2 was released in December 2011. Source code, example files and binaries are freely available under the terms of either the LGPL v2.1+ or Apache v2.0 open source licenses from http://libsbgn.sourceforge.net. CONTACT: sbgn-libsbgn@lists.sourceforge.net.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.