Evidence map›Paper›PMID 22579914›Full record

ArticlePharmacology, biochemistry, and behavior2012

Gene expression in the ventral tegmental area of 5 pairs of rat lines selectively bred for high or low ethanol consumption.

William J McBride, Mark W Kimpel, Jeanette N McClintick, Zheng-Ming Ding, Petri Hyytia, Giancarlo Colombo, Howard J Edenberg, Lawrence Lumeng, Richard L Bell

Abstract read
In one paragraph

Article in Pharmacology, biochemistry, and behavior, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  15. Neural basis of reward anticipation and its genetic determinants.Proceedings of the National Academy of Sciences of the United States of America · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

William J McBrideInstitute of Psychiatric Research, Department of Psychiatry, Indiana University School of Medicine, Indianapolis, IN 46202-4887, USA. wmcbride@iupui.edu
Mark W Kimpel
Jeanette N McClintick
Zheng-Ming Ding
Petri Hyytia
Giancarlo Colombo
Howard J Edenberg
Lawrence Lumeng
Richard L Bell

Funding

Translational Research and Science Education (OUT)P60AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI Marian Lee Logrip · 2003 to 2026
$45.5M
RAT RESEARCH COMPONENTP50AA007611 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI LUMENG, LAWRENCE · 1987 to 2002
$5.3M
Rodents with Genetic Differences in Alcohol PreferenceR24AA015512 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2005 to 2014
$5.1M
Rat Animal Models Core (RAMC)U01AA013522 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2001 to 2014
$4.3M
Rodents with Genetic Differences in Alcohol PreferenceU24AA015512 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2015 to 2019
$2.7M
Rat Animal Models & Drug and Gene Testing Core (RAM-DGTC)U24AA013522 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI BELL, RICHARD LOWELL · 2015 to 2021
$2.4M
Early binge drinking and gene regulationU01AA020892 · NIAAA · INDIANA UNIVERSITY INDIANAPOLIS · PI EDENBERG, HOWARD J · 2011 to 2015
$1.1M
Indiana Gene Array CoreU01AA016660 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI EDENBERG, HOWARD J · 2006 to 2010
$899k
Excessive alcohol drinking and CNS regional changes in genes expressionU01AA016652 · NIAAA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MCBRIDE, WILLIAM J · 2006 to 2010
$886k
NIAAA NIH HHS AA013522NIAAA NIH HHS AA016652NIAAA NIH HHS AA016660NIAAA NIH HHS AA07611NIAAA NIH HHS P50 AA007611NIAAA NIH HHS P60 AA007611NIAAA NIH HHS R24 AA015512NIAAA NIH HHS U01 AA013522NIAAA NIH HHS U01 AA016652NIAAA NIH HHS U01 AA016660NIAAA NIH HHS U01 AA020892NIAAA NIH HHS U24 AA013522NIAAA NIH HHS U24 AA015512
6 · The paper itself

Abstract

The objective of this study was to determine if there are common innate differences in gene expression or gene pathways in the ventral tegmental area (VTA) among 5 different pairs of rat lines selectively bred for high (HEC) or low (LEC) ethanol consumption: (a) alcohol-preferring (P) vs. alcohol-non-preferring (NP) rats; (b) high-alcohol-drinking (HAD) vs. low-alcohol-drinking (LAD) rats (replicate line pairs 1 and 2); (c) ALKO alcohol (AA) vs. nonalcohol (ANA) rats; and (d) Sardinian alcohol-preferring (sP) vs. alcohol-nonpreferring (sNP) rats. Microarray analysis revealed between 370 and 1340 unique named genes that significantly differed in expression between the individual line-pairs. Analysis using Gene Ontology (GO) and Ingenuity Pathways information indicated significant categories and networks in common for up to 3 line-pairs, but not for all 5 line-pairs; moreover, there were few genes in common in these categories and networks. ANOVA of the combined data for the 5 line-pairs indicated 1295 significant (p<0.01) differences in expression of named genes. Although no individual named gene was significant across all 5 line-pairs, there were 22 genes that overlapped in the same direction in 3 or 4 of the line-pairs. Overall, the findings suggest that (a) some biological categories or networks may be in common for subsets of line-pairs; and (b) regulation of different genes and/or combinations of multiple biological systems (e.g., transcription, synaptic function, intracellular signaling and protection against oxidative stress) within the VTA (possibly involving dopamine and glutamate) may be contributing to the disparate alcohol drinking behaviors of these line-pairs.

Indexed as

Gene Expression ProfilingAnimalsDose-Response Relationship, DrugEthanolOligonucleotide Array Sequence AnalysisRatsEthanol

Identifiers

PMID22579914
PMCPMC3383357

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.