Evidence map›Paper›PMID 22577026›Full record

ArticleProteomics2012

Multiplexed quantification of estrogen receptor and HER2/Neu in tissue and cell lysates by peptide immunoaffinity enrichment mass spectrometry.

Regine M Schoenherr, Jeffrey R Whiteaker, Lei Zhao, Richard G Ivey, Mary Trute, Jacob Kennedy, Uliana J Voytovich, Ping Yan, Chenwei Lin, Amanda G Paulovich

Abstract read
In one paragraph

Article in Proteomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Biological Applications for LC-MS-Based Proteomics.Advances in experimental medicine and biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Regine M SchoenherrFred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.
Jeffrey R Whiteaker
Lei Zhao
Richard G Ivey
Mary Trute
Jacob Kennedy
Uliana J Voytovich
Ping Yan
Chenwei Lin
Amanda G Paulovich

Funding

Proteo-genomic Discovery, Prioritization and Verification of Cancer BiomarkersU24CA160034 · NCI · BROAD INSTITUTE, INC. · PI CARR, STEVEN A, PAULOVICH, AMANDA G · 2011 to 2016
$16.2M
Measuring Cancer Biomarker Candidates by Targeted MS and Ab EnrichmentU24CA126476 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CARR, STEVEN A · 2006 to 2010
$14.6M
Measurement of Cancer-Associated Biomarker Proteins in Complex Biological SamplesRC2CA148286 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI CARR, STEVEN A, PAULOVICH, AMANDA G · 2009 to 2010
$4.8M
NCI NIH HHS RC2 CA148286NCI NIH HHS RC2CA148286NCI NIH HHS U24 CA126476NCI NIH HHS U24CA126476NCI NIH HHS U24 CA160034NCI NIH HHS U24CA160034
6 · The paper itself

Abstract

Access to a wider range of quantitative protein assays would significantly impact the number and use of tissue markers in guiding disease treatment. Quantitative mass spectrometry-based peptide and protein assays, such as immuno-SRM assays, have seen tremendous growth in recent years in application to protein quantification in biological fluids such as plasma or urine. Here, we extend the capability of the technique by demonstrating the application of a multiplexed immuno-SRM assay for quantification of estrogen receptor (ER) and human epidermal growth factor receptor 2 (HER2) levels in cell line lysates and human surgical specimens. The performance of the assay was characterized using peptide response curves, with linear ranges covering approximately four orders of magnitude and limits of detection in the low fmol/mg lysate range. Reproducibility was acceptable with median coefficients of variation of approximately 10%. We applied the assay to measurements of ER and HER2 in well-characterized cell line lysates with good discernment based on ER/HER2 status. Finally, the proteins were measured in surgically resected breast cancers, and the results showed good correlation with ER/HER2 status determined by clinical assays. This is the first implementation of the peptide-based immuno-SRM assay technology in cell lysates and human surgical specimens.

Indexed as

Amino Acid SequenceBiomarkers, TumorBreast NeoplasmsCalibrationCell ExtractsCell LineErb-b2 Receptor Tyrosine KinasesFemaleHigh-Throughput Screening AssaysHumansImmunoassayLimit of DetectionMass SpectrometryMolecular Sequence DataPeptidesReceptors, EstrogenBiomarkers, TumorCell ExtractsERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesPeptidesReceptors, Estrogen

Identifiers

PMID22577026
PMCPMC3418804

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.